Pairwise Alignments

Query, 288 a.a., carbohydrate ABC transporter membrane protein 1, CUT1 family from Pseudomonas syringae pv. syringae B728a

Subject, 314 a.a., sugar ABC transporter permease from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  102 bits (254), Expect = 1e-26
 Identities = 62/282 (21%), Positives = 129/282 (45%), Gaps = 6/282 (2%)

Query: 2   RKVQNNKAWWLVMPVFLLVAFSAIIP-----MMTVVNYSVQDIFDQSSRYFVGTDWFRQV 56
           R  +   AW  V P  L +     IP     ++++ ++ +  + +  +  FVG   + ++
Sbjct: 21  RGARERAAWAFVAPAMLAIGLFFAIPVIAALLLSLTDFDIYALANLDNLRFVGLQNYERL 80

Query: 57  LQDPRLHDSLLRQFIYSGCVLLIEIPLGIAIALTMPTKG-RWSSLCLIVMTIPLLIPWNV 115
           L +P    ++     ++   + + I   +A A+ +  +  +W  +  ++   P +     
Sbjct: 81  LTNPLFWGAMKNTLTFAVLGVPLSIVASLAAAVILNARVVKWRPIWRVMFFAPYVTTLVA 140

Query: 116 VGTIWQIFGRGDIGLLGYTLNNVLGINYNYAANASDAWVTVLVIDVWHWTSLVALLCYSG 175
              +W+       G++ + L ++     ++  + S +   +L+  VW       L+  + 
Sbjct: 141 TAVVWRYLLHTRYGVINWGLESIGMPAVDWLGDPSTSIPAILMFVVWKIFGYNMLIFLAV 200

Query: 176 LRAIPDVYYQAARIDRASGWAIFRHIQLPKMKSVLLIAVMLRFMDSFMIYTEPFVLTGGG 235
           L+ +PD  Y+AARID A  W  FRH+ LP +   +L+  ++     F ++ EP+V+T GG
Sbjct: 201 LQTVPDDLYEAARIDGAGPWKQFRHVTLPAIAPTMLLVSIISVASFFQLFAEPYVMTQGG 260

Query: 236 PGNSTTFLSQTLTTMALGQFDLGPAAAFSLVYFLIILLVSWV 277
           P  ST  +   +       + LG A+A + + FL IL ++ V
Sbjct: 261 PAQSTVTVLYFMYEEGFKWWTLGSASAVAFILFLCILAITLV 302