Pairwise Alignments

Query, 1214 a.a., exonuclease SbcC from Pseudomonas syringae pv. syringae B728a

Subject, 1047 a.a., exonuclease subunit SbcC from Escherichia coli ECRC102

 Score =  438 bits (1127), Expect = e-126
 Identities = 397/1223 (32%), Positives = 562/1223 (45%), Gaps = 194/1223 (15%)

Query: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR 60
            MKIL++RLKNL SL G ++IDFT EP AS GLFAITGPTGAGK+TLLDA+CLAL+   PR
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 61   LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT 120
            LSN+ QS+               L+ R T    AEV+F  +    YRA W  NRAR+   
Sbjct: 61   LSNVSQSQ-------------NDLMTRDTAECLAEVEF-EVKGEAYRAFWSQNRARNQPD 106

Query: 121  KKLQASRQTLTDLDSEQILSNQSKREFEQLIENRLGLNFEQFTRAVMLAQSEFSAFLKAD 180
              LQ  R  L      +IL+++ K + E L     GL++ +FTR+++L+Q +F+AFL A 
Sbjct: 107  GNLQVPRVELARCADGKILADKVKDKLE-LTATLTGLDYGRFTRSMLLSQGQFAAFLNAK 165

Query: 181  DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEDALKTLTAQASNIIPLAPELLAELE--- 237
             KER+ELLE+LT T IY Q+    + + K A   L+ L AQAS +  L PE +  L    
Sbjct: 166  PKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASL 225

Query: 238  QRLSDAQQQLKAHQTQQRQLEIKQQWLTELHRLRDEQLAAQEALNSAQQAWDEHSGARQT 297
            Q L+D ++QL   Q Q++Q      WLT L  L+ E    Q+AL   QQA  E   A+  
Sbjct: 226  QVLTDEEKQLLTAQQQEQQ---SLNWLTRLDELQQEASRRQQAL---QQALAEEEKAQPQ 279

Query: 298  LGQLERLGPQRHRFARRVTLNAQLDPLAEQIRQHQRQQTSLHDQQQQLESRRTQAQ-TSL 356
            L  L    P R+           L P  E+I +H     +L   +QQ+E   T+ Q T  
Sbjct: 280  LAALSLAQPARN-----------LRPHWERIAEH---SAALAHTRQQIEEVNTRLQNTMA 325

Query: 357  LEAQQAHSSAKPLLLQAFEAQNTLNHLAQELAKASDLHQQSEQLCIQGKTSLQTLLDQQQ 416
            L A   H +AK                     ++++L QQ +        SL T L +  
Sbjct: 326  LRASIRHHAAK---------------------QSAELQQQQQ--------SLNTWLQEHD 356

Query: 417  QVAQRLERIAGQLQHSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQRAKTA 476
            +  Q    +AG     S+     +    W+ +L       N L      L        TA
Sbjct: 357  RFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNAL--AAITLMLTADEVATA 414

Query: 477  DQQLTEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELARLWASQQDVD 536
              Q  EQR   + L              V + G ++   ++       LA+L  + Q+V 
Sbjct: 415  LAQHAEQRPLRQRL--------------VALHGQIVPQQKR-------LAQLMVTIQNV- 452

Query: 537  RQLADLSQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLARSASVEELR 596
                + +Q+  +  + R++   +  ++ D  T+ EQ              AR  ++E  R
Sbjct: 453  --TLEQTQRNAALNEMRQRYKEKTQQLADVKTICEQE-------------ARIKTLEAQR 497

Query: 597  VQLQDDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDLLTEQRNQLREQVGG 656
             QLQ  QPCP+CGS  HP  +    LE     + +   + +  V  L E+   LR Q+  
Sbjct: 498  AQLQAGQPCPLCGSTSHPAVEAYQALEPGV--NQSRLLALENEVKKLGEEGAALRGQLDA 555

Query: 657  VIARQKELLRQHEQLTVRHQALAPDLESHPLAAQLLDRDADKRDGWLSQQLSQLSEVISR 716
            +  + +    + + L    QAL    ++   +  +  +  D    WL  Q          
Sbjct: 556  LTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQ---------- 605

Query: 717  DEQRQQALLTLQKDAARLQQQLQAATEASQTAAGHVAEQLKQLEADGQRLEEELTAFTPL 776
            DE  +Q  L  Q+    LQ Q+ A  +        + +  +Q+E   QR ++ LTA    
Sbjct: 606  DEHERQLRLLSQRH--ELQGQIAAHNQ-------QIIQYQQQIE---QRQQQLLTALAGY 653

Query: 777  VSPQVLEGLRSDASATVLQLEQQVTQRLDQLEQQHEEQQEQT----ERQQKIEKQQVEQQ 832
                  E       AT  Q  Q   QR ++L       Q+ T       Q  +    E+ 
Sbjct: 654  ALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEET 713

Query: 833  TRLHRQTELAQELTRLGEQQQTSQQ--TLAGLLGDHASAEQWQQALEQTIDQARQAESLA 890
              L    ++ ++   L  QQQT QQ   LA      A A Q+  AL+ ++   +QA  LA
Sbjct: 714  VALDNWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQA-QFDTALQASVFDDQQA-FLA 771

Query: 891  AQALQDIHNQLIQLAAELKSGQQQQQSLQQELAELDVQISEWRAQHPQLDDSALDTLLTY 950
            A   +    QL QL   L++ ++Q Q+L         Q +E  AQH Q     L   +T 
Sbjct: 772  ALMDEQTLTQLEQLKQNLENQRRQAQTLV-------TQTAETLAQHQQHRPDGLALTVT- 823

Query: 951  DDAHVEQLRVQLNSTDKALEQAKVLLQERDQRLQQHQAQHSDLTDSAQLATALQQALEQS 1010
                VEQ++ +L  T + L +      E  Q+L+Q      D  +  Q  T LQQ     
Sbjct: 824  ----VEQIQQELAQTHQKLRENTTSQGEIRQQLKQ------DADNRQQQQTLLQQ----- 868

Query: 1011 ALSEQHCADLRAELSEDQRRRNANSELQARIADANSEYLRWARLASLIGSAEGDRFRKIA 1070
                                          IA    +   W  L SLIGS EGD+FRK A
Sbjct: 869  ------------------------------IAQMTQQVEDWGYLNSLIGSKEGDKFRKFA 898

Query: 1071 QAYNLDLLVHHANAQLRQLVRRYRLKRGGS-MLGLLVMDTEMGDELRSVHSLSGGETFLV 1129
            Q   LD LVH AN QL +L  RY L+R  S  L + V+DT   D +R   +LSGGE+FLV
Sbjct: 899  QGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLV 958

Query: 1130 SLALALGLASMASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQE 1189
            SLALAL L+ + S   RI+SLF+DEGFG+LD E+L  A+DALD L A G+ +GVISHV+ 
Sbjct: 959  SLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA 1018

Query: 1190 MHERIPVQIKVRR-QGNGLSTIE 1211
            M ERIPVQIKV++  G G S +E
Sbjct: 1019 MKERIPVQIKVKKINGLGYSKLE 1041