Pairwise Alignments

Query, 539 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  455 bits (1170), Expect = e-132
 Identities = 259/541 (47%), Positives = 355/541 (65%), Gaps = 2/541 (0%)

Query: 1   MRLRNINLAPRATLFFSAIILLVVVLGVIAILQMGKLRDTEKDVELNWLPSIRQTAMMNS 60
           M +R++N+APRA L F  + L+V  LG  A+LQM  +R     VE NWLPS+     M+ 
Sbjct: 1   MSIRSLNIAPRAGLGFGVLALMVFALGGFALLQMANMRQQSDQVENNWLPSVMAVGDMSQ 60

Query: 61  TVLRVRLETQRAVA--DPQTVQQTIVKFPAYRKAMKDAVYNYETLIASDQERQLFLAVKK 118
            +LR+R  T R +   DPQ + Q   K    +  +  A   Y+ LI    E+ LF   K 
Sbjct: 61  DLLRIRALTLRLLVNRDPQALAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKA 120

Query: 119 SYDDYASQLDLLEPLLKAGDTASIVKLVATGIRPLTNQMETQVEELTQFNNKGAALAGVQ 178
               Y  + + +  L KA      +++V   +  L ++M   + EL   N   A  A   
Sbjct: 121 EEARYLERQEQVVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAASL 180

Query: 179 ATQVYDSGLYIVIGLIIFVALLTLCLATLLTKTITSPIGSALSVAERIASSDLTKEVEVS 238
           A  V+      VIG+I+  AL+T+ LA LLT++I  P+  +L VA+ +AS DLT E+ V 
Sbjct: 181 AQSVFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEISVC 240

Query: 239 GTDEAGRLLSALATMQQNLRSTIMQIADSSSQLAAASEEMTAVTEQSSLGLVSQNDEVNQ 298
           G DE  RL  AL +MQ+NLR TI +I++SS+QLA+ASEE++ VTE ++ GL  Q+ E+ Q
Sbjct: 241 GRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQ 300

Query: 299 AATAVTEMSAAVDEVARNAESASEESRKGQGYTEVGLERVSQTLKSIEKLSSNVRDTSEQ 358
           AATAV +M+AAV+EVA NA + S+ SR+     + G E+V QT+ SIE L+++V D   Q
Sbjct: 301 AATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQ 360

Query: 359 ITGLSNRAQNISKVVEVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRT 418
           +  L+ +   ISKV++VIR+IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVRALAHRT
Sbjct: 361 VEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRT 420

Query: 419 QVSTQEIEQMIQAIQNDSDQAVKAMATSRELAAESLSVAGDASSSLDQIATAITGINERN 478
           Q STQEIEQMI  IQ  +DQAV +M  S   A  +L +A  A ++L++IA+A T INERN
Sbjct: 421 QQSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERN 480

Query: 479 ILIATASEEQAHVAREVDRNLVSIRELASQSSAGASQTASACNEMSKLAVSLNQLVNRFK 538
           ++IA+ASE+QA VAREVDRNL++IR+LA Q+S GA+QT++A +++S+LAV LN LV RF 
Sbjct: 481 LVIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVARFS 540

Query: 539 V 539
           V
Sbjct: 541 V 541