Pairwise Alignments

Query, 539 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

Subject, 541 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

 Score =  463 bits (1191), Expect = e-135
 Identities = 264/544 (48%), Positives = 374/544 (68%), Gaps = 8/544 (1%)

Query: 1   MRLRNINLAPRATLFFSAIILLVVVLGVIAILQMGKLRDTEKDVELNWLPSIRQTAMMNS 60
           M LRN+ +APRA L F+++ LL+++LG  ++LQMG+++    +V  N LPSI+    M+ 
Sbjct: 1   MYLRNLKIAPRAGLGFASLALLMLLLGGFSLLQMGQMQRQSAEVNDNRLPSIQALNEMSQ 60

Query: 61  TVLRVRLETQRAVA--DPQTVQQTIVKFPAYRKAMKDAVYNYETLIASDQERQLFLAVKK 118
           ++LR+R  T R +   DPQ++ Q   +    +  +  A   YE LI S+QER  +   +K
Sbjct: 61  SILRIRALTLRLLINRDPQSLSQNEQRLQGLKSELGAAQQRYEKLIGSEQERAAYQVFEK 120

Query: 119 SYDDYASQLDLLEPLLKAGDTASIVKLVATGIRPL---TNQMETQVEELTQFNNKGAALA 175
           +  +Y ++    E ++       + + +A    PL    + M   + ELTQ + +GA  A
Sbjct: 121 AQGNYLAEQ---EKIMAHSRQEQLDEALAVANGPLGQHADAMAKALSELTQMSQQGAQKA 177

Query: 176 GVQATQVYDSGLYIVIGLIIFVALLTLCLATLLTKTITSPIGSALSVAERIASSDLTKEV 235
              +   Y S + +V+G+++  AL+TL LA LLT++I  P+  A+ VAE +AS DL+++ 
Sbjct: 178 ADASDAAYGSAVRMVLGMLLVAALVTLVLAVLLTRSIVRPLAQAVEVAEVVASGDLSRDF 237

Query: 236 EVSGTDEAGRLLSALATMQQNLRSTIMQIADSSSQLAAASEEMTAVTEQSSLGLVSQNDE 295
            + G DE  +LL AL  MQ++LR TI  I+DSS QLAAASEE+TAVT+ ++ GL  QN E
Sbjct: 238 SIEGRDEPAQLLEALKRMQRSLRETIQHISDSSRQLAAASEELTAVTDGATQGLHQQNAE 297

Query: 296 VNQAATAVTEMSAAVDEVARNAESASEESRKGQGYTEVGLERVSQTLKSIEKLSSNVRDT 355
           + QAATAV +M++AV+EVARNA + SE SR+     + G E+V QT+ SI +L+ +V +T
Sbjct: 298 IEQAATAVNQMTSAVEEVARNAVNTSEASRESDRSAQHGREQVRQTVDSIGQLAEDVTET 357

Query: 356 SEQITGLSNRAQNISKVVEVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 415
           S QI  L+ +   IS+V++VIR+IAEQTNLLALNAAIEAARAGE GRGFAVVADEVRALA
Sbjct: 358 STQIGRLAQQVHGISQVLDVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALA 417

Query: 416 HRTQVSTQEIEQMIQAIQNDSDQAVKAMATSRELAAESLSVAGDASSSLDQIATAITGIN 475
           HRTQ STQEIEQMI  IQ  +++AV AM  S +    +L++A  A  +LD+IA AIT IN
Sbjct: 418 HRTQQSTQEIEQMIGGIQQGTERAVSAMHNSTQRTGSTLALAQSAGRALDEIAEAITSIN 477

Query: 476 ERNILIATASEEQAHVAREVDRNLVSIRELASQSSAGASQTASACNEMSKLAVSLNQLVN 535
           ERN++IA+ASEEQA VAREVDRNLV+IR+L+ Q+SAG++QT++A  E+S+LAVSLN LV 
Sbjct: 478 ERNLVIASASEEQAQVAREVDRNLVNIRDLSLQTSAGSNQTSAASQELSRLAVSLNGLVA 537

Query: 536 RFKV 539
           RF++
Sbjct: 538 RFRI 541