Pairwise Alignments

Query, 288 a.a., Peptidoglycan-binding LysM:Peptidase M23B from Pseudomonas syringae pv. syringae B728a

Subject, 379 a.a., murein hydrolase activator NlpD from Escherichia coli ECRC100

 Score =  198 bits (504), Expect = 1e-55
 Identities = 114/258 (44%), Positives = 154/258 (59%), Gaps = 30/258 (11%)

Query: 60  YVVRRGDTLFSIAFRYGWDWKALAARNQIPEPFTIKPGQTIRFDGRSSSTP----NVVST 115
           Y V++GDTLF IA+  G D++ LA RN I  P+ +  GQT++  G +S TP    N ++ 
Sbjct: 123 YTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQV-GNASGTPITGGNAITQ 181

Query: 116 SGAG------------------RPVTSTSTSTGSSGSVKTTVMSKPVAVV---PVVIPPS 154
           + A                   +P  + S S+G   + K    +KP A     PV +P +
Sbjct: 182 ADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTA 241

Query: 155 ATTGTGPAGKSPTG----WTWPSSGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGSVV 210
           +TT    +  S +     W WP+ G +I  F ++   NKGIDIAG  GQ ++A +DG VV
Sbjct: 242 STTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVV 301

Query: 211 YAGSGLRGYGELIIIKHSDTYVSAYGHNRRLLVREGQQVKAGQTIAEMGSTGTDRVKLHF 270
           YAG+ LRGYG LIIIKH+D Y+SAY HN  +LVRE Q+VKAGQ IA MGSTGT   +LHF
Sbjct: 302 YAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHF 361

Query: 271 EIRRQGKPVDPLGFLPRR 288
           EIR +GK V+PL +LP+R
Sbjct: 362 EIRYKGKSVNPLRYLPQR 379