Pairwise Alignments

Query, 540 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

Subject, 493 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  152 bits (385), Expect = 2e-41
 Identities = 107/359 (29%), Positives = 184/359 (51%), Gaps = 21/359 (5%)

Query: 193 LSLLIAVMAAAACGLLLMRSIMAPMQLIVRI-LDVMRTGDLSTRLSLSRKDE-------F 244
           +++LI ++A      LL+R +++ +  +  + L V +TGDLS R+ L+ KDE       F
Sbjct: 145 VAVLILMLAMLGASQLLIRFLLSQLNTLKDVMLHVEKTGDLSARVPLACKDEVGQMASAF 204

Query: 245 NAVETGFNDMVTELTALVAQAQRSSVQVTTSVTEIAATSRQQQATATETAATTTEIGATS 304
           NA++ G+  +V  +     Q    + ++ +S+ E+      QQ+   + A    E+ AT 
Sbjct: 205 NAMQAGYQRVVNTVAHTARQLDDGAARLASSMNEVQHGMLGQQSETDQAATAINEMTATV 264

Query: 305 REIA---ATSRDLVRTMTEVTSAADQASVLAGSGQQGLARMEDTMHQVMGAANLVNAKLA 361
             IA     +RDL +T          A  LAGSGQ+ + R++ ++  +          + 
Sbjct: 265 HHIAQHAGATRDLSQT----------ADTLAGSGQEVVTRVQRSIAGLSTGVQQTAVMIQ 314

Query: 362 ILNEKAGNINQVVVTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAV 421
            L E +  IN VV  I  +A+QTNLL+LNAAIEA +AGE GRGFAVVA EVR LA +   
Sbjct: 315 KLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQS 374

Query: 422 ATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMFEVTQVGEQLSQIIHQVQALAPRVLM 481
           +T +I +MV  +Q+     V  M + S +    + +  + G  L++I   V  +      
Sbjct: 375 STDEITRMVSALQAGTRDAVDFMQESSFKADDCVHQAQEAGAALAEITGAVAQMRESNTQ 434

Query: 482 VNEGMQAQATGAEQINQALVQLADASSQTVESLRQASFAIDELSQVAVGLRSGVSRFKV 540
           +    + Q+  AE++N+A+V + D +  TV+    ++   ++L+ +A  L   + + K+
Sbjct: 435 IAVAAEQQSHVAEEMNRAVVSIRDVTENTVQQTVDSATTSNQLATLAGELSKAIGQLKL 493