Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas sp. SVBP6

 Score =  357 bits (915), Expect = e-102
 Identities = 235/694 (33%), Positives = 386/694 (55%), Gaps = 34/694 (4%)

Query: 13  LSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFST 72
           L  + R  L     ++ ++ MM+ P+P  L+DV    NI +S +++++ ++  RPL F+ 
Sbjct: 14  LVGLGRGNLGVPLLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAA 73

Query: 73  FPAVLLLTTMFRLALSVSTTRLILLNQDAGH-----IVEAFGQFVVGGNLAVGLVIFLIL 127
           FP +LL+ T+ RLAL+V++TR+++L+   GH     +++AFG+ V+GGN  VG+V+F IL
Sbjct: 74  FPTILLVATLLRLALNVASTRVVMLHGHDGHEAAGKVIQAFGEVVIGGNYVVGIVVFAIL 133

Query: 128 TVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKESQ 187
            ++NF+V+TKG+ R++EV ARFTLDAMPGKQM+ID+DL A LI   +A+ RRAE+  E++
Sbjct: 134 MIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKARRAEVAGEAE 193

Query: 188 LFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGLIA 247
            +G+MDGA KFV GDAIA L+I+ IN+IGG+++G+ QHNM   DA ++Y +LTIGDGL+A
Sbjct: 194 FYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGMFQHNMTFADAGKVYALLTIGDGLVA 253

Query: 248 QIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGM 307
           Q+P+LL+S  + +++TR   +E     ++G++I  Q+   PKA  +++  M+    +PGM
Sbjct: 254 QLPSLLLSTAAAIMVTRASGSE-----DMGKQINRQMFDSPKALAVSAGLMIVMGLVPGM 308

Query: 308 PTGVFITIAIICGAGGLL---QLQRAKPKADE--QRTATVAPEMN--------GKEDLRT 354
           P   F+++ ++ G G  L   +  +AK KA E  QR   + P           G +D+  
Sbjct: 309 PHIAFLSLGLLAGGGAYLVWRKQNQAKVKALEEVQRQQDLLPSPQRAMETKELGWDDVTP 368

Query: 355 FSP-SRQFVLQFHPGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFR 413
                 +   +  P  D  Q   L++ I+  R +L    G  +P+  I    D+AP  +R
Sbjct: 369 IDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYR 428

Query: 414 FTVYDVPMLKA-TFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWL---PAEQSGEL 469
            T+  V + +A  +    +A+   Q+ G     A        E  W+ +      QS   
Sbjct: 429 LTLMGVILAEAEIYPDRELAINPGQVFGTLNGIAARDPAFGLEAVWIDINQRSQAQSLGY 488

Query: 470 NPVSSTTLIIERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEM-QRVLTLTRFSA 528
             V ++T++   + + L     + IG +E + +L  L    P+LA+E+   V++L+    
Sbjct: 489 TVVDASTVVATHLNQILHKHCHELIGHEEVQQLLQVLAKASPKLAEELVPSVISLSGLLK 548

Query: 529 VLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEG-LQV 587
           VLQ L +E VP+R IR IAE +  +    +DT  L   VR+ L   I     G E  L V
Sbjct: 549 VLQALLAEQVPVRDIRSIAEAIANNPAKSQDTAALVAVVRVGLCRAIVQSIVGVESELPV 608

Query: 588 WLLTPESEGLLRDGLRQT--QTETFFALSNEISQMLVQQLHIAFPVR--APEQAVLLVAQ 643
             L P  E +L + L++     E    L   +++ L + L  A   +    + A+LLVA 
Sbjct: 609 ITLEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAG 668

Query: 644 DLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVM 677
            +R+ L    R    ++ VL++ EI +  +V ++
Sbjct: 669 PVRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIV 702