Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas fluorescens SBW25

 Score =  358 bits (918), Expect = e-103
 Identities = 230/699 (32%), Positives = 392/699 (56%), Gaps = 44/699 (6%)

Query: 13  LSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFST 72
           L+ + R  L     ++ ++ MM+ P+P  L+DV    NI +S +++++ ++  RPL F+ 
Sbjct: 14  LTDLSRGNLGVPLLLLVMLAMMMLPMPPFLLDVFFTFNIALSVVVLLVCVYALRPLDFAV 73

Query: 73  FPAVLLLTTMFRLALSVSTTRLILLNQDAGH-----IVEAFGQFVVGGNLAVGLVIFLIL 127
           FP +LL+ T+ RLAL+V++TR+++L+   GH     +++AFG+ V+GGN  VG+V+F IL
Sbjct: 74  FPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAIL 133

Query: 128 TVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKESQ 187
            ++NF+V+TKG+ R++EV ARFTLDAMPGKQM+ID+DL A LI  ++A+ RR E+ +E++
Sbjct: 134 MIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQAKTRRLEVAQEAE 193

Query: 188 LFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGLIA 247
            +G+MDGA KFV GDAIA L+I+ IN+IGG+++G+ QH M  GDA ++Y +LTIGDGL+A
Sbjct: 194 FYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGKVYALLTIGDGLVA 253

Query: 248 QIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGM 307
           Q+P+LL+S  + +++TR   +E     ++G++I+ Q+ + PKA  +A+  M     +PGM
Sbjct: 254 QLPSLLLSTAAAIMVTRASGSE-----DMGKQISRQMFASPKALAVAAGIMAIMGIVPGM 308

Query: 308 PTGVFITIAIICGAGGLL--------QLQRAKPKADEQRTATVAPEMNGKEDLR--TFSP 357
           P   F+++A + G G  L        ++Q  +  A +Q            ++L     +P
Sbjct: 309 PHVSFLSMAALAGGGAYLFWKKQNAVKVQALQEVARQQELLPSPARAQETKELGWDDVTP 368

Query: 358 SRQFVLQFH----PGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFR 413
                L+      P  D  Q   L++ I+  R +L    G  +P+  I    D+AP  +R
Sbjct: 369 IDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYR 428

Query: 414 FTVYDVPMLKAT-FTQSHVAVEARQLEGENLPAAIPGNTDRQED---QWVWLPAEQSGEL 469
            T+  V + +A  +    +A+   Q+ G     ++ G T +      + VW+   Q  + 
Sbjct: 429 LTLMGVILAEAEIYPDRELAINPGQVFG-----SLNGITAKDPAFGLEAVWIEISQRSQA 483

Query: 470 NP-----VSSTTLIIERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEM-QRVLTL 523
                  V ++T++   + + L   + + IG +E + ++G L    P+LA+E+   VL+L
Sbjct: 484 QSLGYTVVDASTVVATHLNQILYKHSHELIGHEEVQQLMGLLGKASPKLAEELVPGVLSL 543

Query: 524 TRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAE 583
           ++   VLQ L +E VP+R IR IAE +  +    +DT  L   VR+ L   I     G +
Sbjct: 544 SQLLKVLQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGLSRAIVQSIVGLD 603

Query: 584 G-LQVWLLTPESEGLLRDGLRQT--QTETFFALSNEISQMLVQQLHIAFPVR--APEQAV 638
             L V  L P  E +L + +++     E    L   +++ L + L  A   +    +  +
Sbjct: 604 SELPVITLEPRLEQILLNSIQKAGQGQEEGVLLEPSMAEKLQRSLIDAAQRQEMQGQPVI 663

Query: 639 LLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVM 677
           LLVA  +R+ L    R    ++ VL++ EI +  +V ++
Sbjct: 664 LLVAGPVRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIV 702