Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 687 a.a., EscV/YscV/HrcV family type III secretion system export apparatus protein from Erwinia amylovora T8

 Score =  393 bits (1010), Expect = e-113
 Identities = 244/698 (34%), Positives = 398/698 (57%), Gaps = 40/698 (5%)

Query: 6   NFLNMVALSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLP 65
           NF++ +      R EL+    +I IV M+I PLPT ++D LI +N+ ++ L+ + + ++ 
Sbjct: 4   NFISQIR----SRPELIILVIMIMIVVMLIIPLPTYIVDFLIGLNLTMALLIFLGSFYIN 59

Query: 66  RPLAFSTFPAVLLLTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFL 125
           R L +STFP++LL++T+FRLA+S+ST+RL+L + DAG I+ +FG+FV+  N+ VG VIF 
Sbjct: 60  RVLDYSTFPSILLISTIFRLAISISTSRLVLTDADAGEIITSFGEFVIADNMVVGFVIFF 119

Query: 126 ILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKE 185
           I+TVV F+VITKGSER+AEV ARF+LDAMPGKQMSID+DL+A +I   E ++RR++L  E
Sbjct: 120 IVTVVQFIVITKGSERIAEVAARFSLDAMPGKQMSIDADLKAGVINEKEVKRRRSDLEAE 179

Query: 186 SQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGL 245
           SQL+GA+DGAMKF+ GDAIA +II+ +N +GGIS+GV Q  M    A+ ++T+LTIGD L
Sbjct: 180 SQLYGALDGAMKFIKGDAIAGIIIIFVNFLGGISVGVFQQGMDVSHAMSVFTLLTIGDAL 239

Query: 246 IAQIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALP 305
           +AQIPALLIS++ G+I+TRV N++     N+G +I + + S     +I +   +    LP
Sbjct: 240 VAQIPALLISISGGLIVTRVNNSD---NNNLGSKILQDMLSNKSILLITAFLAIALGLLP 296

Query: 306 GMPTGVFITIAIICGAGGLLQLQRAKPKADEQRTATVAPEMNGKEDLRTFSPSRQFVL-- 363
           G P  VFI +AI       L     K K DE+     A E N ++D +    S+  ++  
Sbjct: 297 GFPLPVFILLAI------PLLGMFVKHKFDEKNKIVKAGEENLQDDDQPVLKSKPVIIDG 350

Query: 364 QFHP-----------GQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEF 412
           ++ P           G +    E   + + KR     V+YG+ LP  ++ + +       
Sbjct: 351 EYIPETIPLIITAWKGYEQYFQEHNFTSLFKR--NFFVEYGVRLPEVLMNYEESAQRGIL 408

Query: 413 RFTVYDVPMLKATFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAEQSGELNPV 472
              + ++ +           V  +  E + + A++      Q + + WLP E++ +   +
Sbjct: 409 TVAINEIQVASYNIFPGMCKVLMQGEELQVIDASVQTIASPQGNVY-WLPEERNEKAIQL 467

Query: 473 S-STTLIIERMERALQSC----APQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFS 527
              T   I+     + +       +F G+QETK +L  LE + P+L +E  R  T+ R +
Sbjct: 468 GYHTRNAIDEFYACVSTLLVHNISEFFGIQETKTLLDDLEKKYPDLLKECYRNNTVQRIT 527

Query: 528 AVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQV 587
            V QRL  E + +R +R+I E L++    E+D  +L ++VR  L   I +++     ++ 
Sbjct: 528 EVFQRLLQERISIRNMRLILEALVQWAPKEKDPIMLVEHVRGVLARYISNRFAFRGRIRT 587

Query: 588 WLLTPESEGLLRDGLRQTQTETFFALS----NEISQMLVQQLHIAFPVRAPEQAVLLVAQ 643
            +++ + E ++R  LRQT + TF  L       +++ L + L +   V A    +L+V+ 
Sbjct: 588 LVMSHDMENMIRGALRQTSSGTFINLPPPQIESVNKCLEEVLQLN-GVNA-RDIILMVSM 645

Query: 644 DLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGRFD 681
           D+R  ++ +       + VLS+ EIS   +V V+G  +
Sbjct: 646 DIRRFVKKITEGNNPEMEVLSYGEISTGVEVDVIGSLE 683