Pairwise Alignments

Query, 341 a.a., TRAP dicarboxylate transporter- DctP subunit from Pseudomonas syringae pv. syringae B728a

Subject, 327 a.a., Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  166 bits (421), Expect = 6e-46
 Identities = 96/281 (34%), Positives = 158/281 (56%), Gaps = 8/281 (2%)

Query: 47  MGKKLEEQSKGEISFKMYAGGVLGSEKEVVEQVQSGAVQMTRVSLGIVGPVVPDVNVFNL 106
           +G+++EE++ G+I  + +  G LG E+E+VE  Q G V +T+VS G++    P+  VF+L
Sbjct: 46  LGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQVGVVDITKVSSGLMESFSPEYGVFSL 105

Query: 107 PFVFHDQAHMRTIIDGQIGQEILDKITNSEFNMVALAWMDGGTRNLY-TKKPVRQISDLK 165
           P++F        ++D     E + + T ++   + + W D G RN Y +K P+++I DL+
Sbjct: 106 PYLFATVEEYYRVMDNPQVMEPVYQSTAAQ-GFIGVGWYDSGARNFYMSKAPIKRIEDLR 164

Query: 166 GMKIRVQGNPVFIETINDMGGNGIAMATGEIFSALQTGVIDGAENNPPTYFQHNHYQNAK 225
           G KIRV  +   I+T+  +G + IAM+  E++++LQ G++DGAENN        H + A+
Sbjct: 165 GKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVAR 224

Query: 226 FFTMTEHLILPEPIVMSKTTWEKLNPEQQALVKKLAREAQMEERVLWDKSSADAE-TKLK 284
           ++T   H  +P+ ++MS  T EKL PEQQ +V+   + +   E+  WDK         +K
Sbjct: 225 YYTYDMHTRIPDILLMSTLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVK 284

Query: 285 AAGVEFITLTPEQKKAFYDATQPVRD--KYGAKYKGLIDRI 323
              VEF  +    KK F +A QP+ D  K   +  GL  RI
Sbjct: 285 DFNVEFYEI---DKKPFQEAVQPIYDGLKNKPRLYGLYQRI 322