Pairwise Alignments

Query, 318 a.a., Relaxase from Pseudomonas syringae pv. syringae B728a

Subject, 502 a.a., TraI domain-containing protein from Erwinia tracheiphila SCR3

 Score =  131 bits (330), Expect = 3e-35
 Identities = 76/217 (35%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 15  SNAAAGFFKPESPDALLSTSRRRQLIENIWQRTSLPREQFEALYMQAFKSYAALVQHLPA 74
           S+  AG++ P+S   LLST  R + +  IW+ TSLP+E ++AL +   ++ A ++Q  P 
Sbjct: 23  SSPPAGYYYPQSAAGLLSTEERVRTLVRIWENTSLPKETYQALCLAPLQACAEVMQQFPY 82

Query: 75  SENHHHAYHGGMLDHGLEIVAYALKIRQMYLLPIGAPPESQAAQSEAWSAASAYGALVHD 134
           S     AY GGMLD  L+ + YA+   + Y+LP G PPE QA  S AW+    Y AL   
Sbjct: 83  SNAGRFAYPGGMLDATLKTLLYAVMKARSYMLPPGVPPEDQARDSAAWNTVVFYAALFSH 142

Query: 135 LGKIAVDVKVELADGTIWHPWHGPLDQPYRFKYVKGRDYRLHGAASSLIYSHVIPAKALD 194
           L  +   +KVEL DG++W P+ G     YRF++V            +L  S V+P     
Sbjct: 143 LSALG-SLKVELDDGSVWIPFDGQPASAYRFRFVPPGMAGADICLGALFASRVLPGDVFS 201

Query: 195 WLSGFPELWSQLVFAFAFAFAGQYEHADILGEIVSQA 231
           WL   P     L+        GQ     ++  IVS A
Sbjct: 202 WLKQHPPALDMLM----LWIGGQRAQCGVINAIVSDA 234



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 158 PLDQPYRFKYVKGRDYRLHGAASSLIYSHVIPAKALDWLSGFPE--------LWSQLVFA 209
           P     RF Y  G    L     +L+Y+ V+ A++     G P          W+ +VF 
Sbjct: 81  PYSNAGRFAYPGGM---LDATLKTLLYA-VMKARSYMLPPGVPPEDQARDSAAWNTVVF- 135

Query: 210 FAFAFAGQYEHADILGEIVSQADQASVAQELGGNPGKA 247
               +A  + H   LG +  + D  SV     G P  A
Sbjct: 136 ----YAALFSHLSALGSLKVELDDGSVWIPFDGQPASA 169