Pairwise Alignments

Query, 458 a.a., transcription termination factor NusA from Synechocystis sp000284455 PCC 6803

Subject, 497 a.a., NusA antitermination factor from Kangiella aquimarina DSM 16071

 Score =  196 bits (497), Expect = 2e-54
 Identities = 123/356 (34%), Positives = 194/356 (54%), Gaps = 18/356 (5%)

Query: 81  EEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQVLLQKLRDQQR 140
           + VE+   + +L        E QLGD V   +  E  +FGR+AA   KQV++QK+R+ +R
Sbjct: 69  DAVEDPLTETTLSAAQVEDPEIQLGDYVEEQI--ESIEFGRIAAQTAKQVIVQKVREAER 126

Query: 141 KIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQLPNDNYRANST 200
               E F+D  G ++     +  R  I + + ++      EA + + E +P +  RA   
Sbjct: 127 AKTVEAFRDKVGELVTGVVKKVTRDYIFIDLGNN-----AEAVIQREEMMPRETVRAGDR 181

Query: 201 FRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAVAREAKPPSPSV 260
            R  L  +     RGPQL VSR    ++ +LF +EVPEI EEV+ I   AR+        
Sbjct: 182 VRGLLYAIST-ENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDP------- 233

Query: 261 GPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPDPATYIAQALSP 320
           G R K+AV T ++ +DPVGAC+G RG+R+ AV  EL GE+ID++ +  +PA Y+  A++P
Sbjct: 234 GSRAKVAVKTNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAP 293

Query: 321 ARVDQVYLIHAEERHALVIVAEDQLSLAIGKEGQNVRLAARLTGWKIDIKDPETYARDKE 380
           A V  + ++  + R   + V+EDQL+ AIG+ GQN+RLA+ LTGW++++   E +A   +
Sbjct: 294 AEVVSI-VVDEDSRSMDIAVSEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQ 352

Query: 381 AIEQSILERAAASAQARAE-REAAEQEAQAKLEAEMAALEAEEAEELEETPEAIAE 435
           +  +SI+    A      +  +   QE    LE E+A +   E  E+E   E + E
Sbjct: 353 SETESIVSMFVADLGVDEDLADILVQEGFTTLE-EVAYVPQSEMLEIEGFDEDLVE 407