Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 408 a.a., RND efflux system, membrane fusion protein CmeA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  124 bits (311), Expect = 5e-33
 Identities = 94/340 (27%), Positives = 164/340 (48%), Gaps = 21/340 (6%)

Query: 33  PAAFQGPPALPVDVTKATVETVNDLTEYLGALEATEQTILRPQIQGRIVSVAVQPGQIVS 92
           PA+   PP++PV   KA   T+    E+ G L A E   LR ++ G + +++V  G++VS
Sbjct: 38  PASAPPPPSVPV--AKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAISVPEGRLVS 95

Query: 93  VGQPMFVLDSEQVEADVAAANAEVARQEAQLRDAKITFERQKFLADQGVVPLQNLDNARR 152
            GQ +F +D    E  +  A A++ + E   R A+  F+R + L   G V  +N D+   
Sbjct: 96  RGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTA 155

Query: 153 ELQTAQAQLKAAQQNAVAKSVNVQYKTVRAPINGLVGDIRLKIGDFVDTGAE-----LTT 207
                QAQ+++A+    A  + + +  + API G V  I +  G+ V  G       LTT
Sbjct: 156 TRNARQAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTT 215

Query: 208 ITRNNQLFINIPV------PTVRIPQLRKGQPVKLLDPFSKNILA-TGAVDFVSPVVQQN 260
           I  +N +++   +        +R  +  K  PV  +   + N L   G +DF+   + ++
Sbjct: 216 IVSHNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRS 275

Query: 261 LQTVLVKVVVPNADGLIRNGQIVQSEI-VWDRKEAVLVPTQAVTPLAGANFVYVVEPKPN 319
             T+  + V+P+ DG++  G   +  + + + +E VL+   AV+   G N+V +V  K N
Sbjct: 276 TGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYVLIV-GKEN 334

Query: 320 SPDQFQVRQQKVELGSIFNNRYQIRSGLKPGETVATTNLL 359
                QV  + VELG + +    +  G+ PGE +    L+
Sbjct: 335 -----QVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLV 369