Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 400 a.a., efflux RND transporter periplasmic adaptor subunit from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  120 bits (301), Expect = 7e-32
 Identities = 105/363 (28%), Positives = 160/363 (44%), Gaps = 26/363 (7%)

Query: 12  LTGWGVASVVLMGVASCQGRQPAA---FQGPPALPVDVTKATVETVNDLTEYLGALEATE 68
           + G  +A+V +M   +  G  P A    QG P  PV V     + V D  E+ G  EA E
Sbjct: 1   MRGLKIAAVSVMVTGALYGCSPKAEAPAQGAP--PVTVAVPLKQQVRDWDEFTGRFEAVE 58

Query: 69  QTILRPQIQGRIVSVAVQPGQIVSVGQPMFVLDSEQVEADVAAANAEVARQEAQLRDAKI 128
              +R ++ G I +V  + GQ+V  GQ +F LD    +A +A A A+VA+ ++QL  A+ 
Sbjct: 59  SVDVRARVGGYIQAVHFRDGQMVQKGQLLFTLDPRPAQAALAQAQAQVAQAQSQLSLARA 118

Query: 129 TFERQKFLADQGVVPLQNLDNARRELQTAQAQLKAAQQNAVAKSVNVQYKTVRAPINGLV 188
              R + L     V     D+ +  +  AQA L A         +N++Y  V AP +G V
Sbjct: 119 NLARSEALLASQAVSKAEYDSNKAAVDAAQANLAAGNAAVRNARLNLEYTRVTAPTSGRV 178

Query: 189 GDIRLKIGDFVDTGAE----LTTITRNNQL-FINIPVPTVRIPQLRKGQP-------VKL 236
            D R+  G+ +  G+     LTTI     + F+      V +  LR+G         V+L
Sbjct: 179 SDRRVDPGNVIAGGSSAGDILTTIISGGPIHFVFDGSEAVLLKYLRQGGANQGAVVNVRL 238

Query: 237 LDPFSKNILATGAVDFVSPVVQQNLQTVLVKVVVPNADGLIRNGQIVQSEIVW-DRKEAV 295
            D        TG +DF    V      + ++ ++PNADG +R G    +++      +A+
Sbjct: 239 QD--ESTYKHTGRLDFSDNAVDTASGVIRLRAILPNADGFLRPGMFGSAQVAGAGAYDAL 296

Query: 296 LVPTQAVTPLAGANFVYVVEPKPNSPDQFQVRQQKVELGSIFNNRYQIRSGLKPGETVAT 355
           LVP  A+        V VV           V  + V+LG I      +RSGL P + V  
Sbjct: 297 LVPDSAIGTDQARRTVAVVNADGT------VTNKAVQLGPIVQGLRVVRSGLAPTDRVII 350

Query: 356 TNL 358
             L
Sbjct: 351 AGL 353