Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 367 a.a., efflux RND transporter periplasmic adaptor subunit from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  108 bits (270), Expect = 2e-28
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 17/335 (5%)

Query: 33  PAAFQGPPALPVDVTKATVETVNDLTEYLGALEATEQTILRPQIQGRIVSVAVQPGQIVS 92
           P   +G  A  V          +D    LG         +       I  V    GQ VS
Sbjct: 37  PGGGRGRGAQQVSEAVVAQRPFSDQIRVLGVARGERSVNVTSSTTELITRVLFADGQYVS 96

Query: 93  VGQPMFVLDSEQVEADVAAANAEVARQEAQLRDAKITFERQKFLADQGVVPLQNLDNARR 152
            G P+  L + + +A +  A A V + + +       ++R K LAD+GV P   L+ A  
Sbjct: 97  AGAPLVELQAREEDAAIIEARANVNQAQRE-------YDRYKALADRGVAPQVMLEQAET 149

Query: 153 ELQTAQAQLKAAQQNAVAKSVNVQYKTVRAPINGLVGDIRLKIGDFVDTGAELTTITRNN 212
            L+TA+A L+AAQ            + +R+P +G VG   +  G  ++ GA +TT+   +
Sbjct: 150 ALETARASLQAAQARR-------GDRVIRSPFSGRVGLTTVTPGTLINPGAVITTLDDTS 202

Query: 213 QLFINIPVPTVRIPQLRKGQPVKLLDPFSKNILATGAVDFVSPVVQQNLQTVLVKVVVPN 272
            + ++ P+P   +  LR G  +        +   TG +  +   V +  +    +   PN
Sbjct: 203 TIRVDFPLPERYLNLLRPGAQLTATADAYGDEPFTGRIALIDTRVNETTRAATARAEFPN 262

Query: 273 ADGLIRNGQIVQSEIVWDRKEAVLVPTQAVTPLAGANFVYVVEPKPNSPDQFQVRQQKVE 332
             G IR G +++  +   ++++  VP  AV       FVY + P  N     +V   +VE
Sbjct: 263 PGGRIRPGMLMRVAVQQGQRQSAAVPESAVQYEGAGAFVYRIAPGQNGSTAQRV---EVE 319

Query: 333 LGSIFNNRYQIRSGLKPGETVATTNLLSLTDKATV 367
            G++ N   +I SG++ G+ +  + L  +   A V
Sbjct: 320 TGAVENGFVEILSGIEAGDRIVGSGLNRIQPGAPV 354