Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 385 a.a., anaerobic multidrug efflux transporter, ArcA-regulated from Escherichia coli BL21

 Score =  113 bits (282), Expect = 1e-29
 Identities = 85/330 (25%), Positives = 155/330 (46%), Gaps = 20/330 (6%)

Query: 44  VDVTKATVETVNDLTEYLGALEATEQTILRPQIQGRIVSVAVQPGQIVSVGQPMFVLDSE 103
           V V   +  +VN L+E  G     E   +RPQ+ G I+      G  V+ G  ++ +D  
Sbjct: 36  VGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95

Query: 104 QVEADVAAANAEVARQEAQLRDAKITFERQKFLADQGVVPLQNLDNARRELQTAQAQLKA 163
            ++A++ +A   +A+  +   +A+ITF RQ  L     V  Q+ D AR +L  A+A +  
Sbjct: 96  PLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTV 155

Query: 164 AQQNAVAKSVNVQYKTVRAPINGLVGDIRLKIGDFV--DTGAELTTITRNNQLFINI--- 218
           A+      ++N+QY  V +PI G+ G   + +G  V  +    L T+ R + +++++   
Sbjct: 156 AKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQS 215

Query: 219 ---------PVPTVRIPQLRKGQPVKLLDPFSKNILATGAVDFVSPVVQQNLQTVLVKVV 269
                     V + +I Q++   PV+L     K    TG + F  P V +   +V ++ +
Sbjct: 216 VQDFLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAI 275

Query: 270 VPNADGLIRNGQIVQSEI-VWDRKEAVLVPTQAVTPLAGANFVYVVEPKPNSPDQFQVRQ 328
            PN +G +  G  V + +    R+  +LVP + VT  A      ++  K    D  Q+R+
Sbjct: 276 FPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDK---DDVVQLRE 332

Query: 329 QKVELGSIFNNRYQIRSGLKPGETVATTNL 358
             +E      +++ + SGL+ G+ V  + L
Sbjct: 333 --IEASKAIGDQWVVTSGLQAGDRVIVSGL 360