Pairwise Alignments

Query, 449 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase from Synechococcus elongatus PCC 7942

Subject, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 2e-38
 Identities = 140/464 (30%), Positives = 207/464 (44%), Gaps = 37/464 (7%)

Query: 5   SLCPAALPARLEALLRQDRSVRWSIAIADLDGRS---LFRYRAAEALIPASNQKLLTTIA 61
           S+ P + PA LE LL        ++++   D RS   L+++ +   LIPASN KLLTT A
Sbjct: 21  SVSPTSTPATLEQLLADPALNGATVSLMVRDARSGSTLYQHNSRTRLIPASNLKLLTTAA 80

Query: 62  ALNRLGPDARLQTRLW----LQPSRQT--LIVEGAGDPSFDRAGINALAATVPSDRYNQL 115
           A++ LGP  R  T+L     LQ  R T  L ++G GDP+   A   ALAA + +    Q+
Sbjct: 81  AMDVLGPQYRFSTQLLSNGTLQGERLTGNLYLKGLGDPTTQFADYQALAAQLAAQGVRQV 140

Query: 116 IG---LDDPA--SSYWPAAWSGLDRLQGYGAPLNRLIFLENAH-------QLTLQPRSLG 163
            G    DD    +      W+  D    YGA ++ L    N              P  +G
Sbjct: 141 QGDLVFDDTFFDAERLGVDWAHDDESTYYGAQISALTVSPNTDFDAGTLLVTAKAPSGVG 200

Query: 164 QPLGVLWEDPLDRQRWQVRNRSRTVSSQAAEFINLDRDPQRPILTVAGQLRAGSESEAVA 223
           QP+ V+     D     V+  +R VS     +  + R     +L + G L  G +S    
Sbjct: 201 QPVSVVVSPSTD----YVQLSNRAVSGPGNNY-GITRQHGTNLLQLTGTLAPGKQSRQW- 254

Query: 224 IAATQPGQRFLEALQIRLGTAGSSISTVSLQTNWPSGDRILLTTVESPPLRELIRTTNED 283
           ++  +P Q      +  L   G  +    +          +L   +S PL+ L+    + 
Sbjct: 255 VSVWEPTQLVANLFEQALAQQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLTPLLKL 314

Query: 284 SQNLYAEALLRWIGRSGQPDPVRDRRAADQAELGRALQAIGISTTGLVVDDGSGLSRRNR 343
           S N  +EA L+ +GR            A  A+  R     G+    L   DGSGLSRRN 
Sbjct: 315 SNNNMSEAFLKAMGRKASNAGTAQAGVAAVADFMRRQ---GLDPMTLSQVDGSGLSRRNL 371

Query: 344 VSAQTLLEALLWQVQQPTNQALRDSLPIAG-----SSGTLRRRFANSPLRGRVQAKTGFL 398
           VS+Q L + LL   +QP  +A  ++LPIAG     S G+LR R   +P    + AKTG +
Sbjct: 372 VSSQNLTDLLLATAKQPWFEAWYNALPIAGNTDRISGGSLRYRLRGTPAENNLHAKTGSM 431

Query: 399 TGAAGLSGFIDLPNYGPIAFSILANQPNATSLTSRIDRLVNAIA 442
            G + LSG+I       + FS+++N  N  S  + I  L N +A
Sbjct: 432 AGVSSLSGYITDAQGRRLVFSMISN--NYLSTAAPIRALENRVA 473