Pairwise Alignments

Query, 469 a.a., DEAD/DEAH box helicase-like from Synechococcus elongatus PCC 7942

Subject, 586 a.a., DNA damage response helicase (yejH or radD) (from data) from Escherichia coli BW25113

 Score =  135 bits (340), Expect = 4e-36
 Identities = 120/405 (29%), Positives = 194/405 (47%), Gaps = 48/405 (11%)

Query: 4   FELRDYQQQVVEELRHSYATGHRSPLVAMPTGAGKTAVFSYISLQSAAKQKRTLILVHRK 63
           F LR YQQ+ V+   + +       ++ +PTGAGK+ V + ++  +     R L+L H K
Sbjct: 3   FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVK 59

Query: 64  ELLLQASRSLDRLGVRHGLIASGFSWMPYPTQVA--SVQTLVRRLDRLDWEPELIVVDEA 121
           EL+ Q       LG+   + A+G        +V   SVQ++ R LD    E  L++VDE 
Sbjct: 60  ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119

Query: 122 HHVVPD--NTWGKVLS----AYPRSRVLGVTATPCRTD----------GRGLGD---VFD 162
           H +  D  + + ++L+      P  R+LG+TATP R            G   GD   +F 
Sbjct: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179

Query: 163 DLIIGPTIAELTERGFLCPT-KIYAPPIQADLTGVRMRA-GDYAKDQLAQAMDK-----P 215
           D I    +  + + G+L P  ++  P +Q D + ++ ++ G +++  L + + K     P
Sbjct: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239

Query: 216 VIVGDAIDHYRRLCPGVPAIGFCASVEIAQKVAVEFSSAGFKAASLDGTLDSATRSHLID 275
            I+   ++ +     GV    F A+VE A+++     +    AA + G    A R  LI+
Sbjct: 240 HIISQIME-FAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294

Query: 276 DLGSGRIQVLTSCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHALIL 335
           +  + R + L +  +++ G D P V    +LRPT+S+ LY Q VGR LR APGK+  LIL
Sbjct: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354

Query: 336 DHVGNVMRHGLPEADREWTLEGEKRRSRKGESEEKPETVRQCPKC 380
           D+ GN      PE             + KG+S+  P  V  CP C
Sbjct: 355 DYAGNPHDLYAPEVG-----------TPKGKSDNVPVQV-FCPAC 387