Pairwise Alignments

Query, 451 a.a., TPR repeat from Synechococcus elongatus PCC 7942

Subject, 677 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

 Score =  115 bits (288), Expect = 4e-30
 Identities = 120/404 (29%), Positives = 176/404 (43%), Gaps = 33/404 (8%)

Query: 42  DWLAAAGQPEEAIAAYQAVLEFQPGCPQSIAAWAAVLNEQGQFAEAIALLDQASEQT--- 98
           D +A AG       A+   L   P   +++     V   QG+  E+  L  +A +     
Sbjct: 275 DRIAPAGD------AFTRALRLAPTMAEAMTNLGTVRRLQGRIVESADLQRRALDLRPGY 328

Query: 99  ADLWHQRAVALQSLGDWPQALTSCDSALQLDPTAAESQFLRSKLRLGLGDWSQGWPEYES 158
           A      A+ALQ LGD   A      AL  DP  A ++F RS L+L  G  ++GW +Y  
Sbjct: 329 AAAHTNLALALQDLGDEAAAEREFTLALDADPAQALARFNRSLLQLRQGRLAEGWEDYAV 388

Query: 159 RLLVFSELRDRLPSFGCPLWQGEDLTNKTLLIWGEQGYGDQIQFVRYLSVLHDRWPETPL 218
           R      L+ + P    P W G DL  + LL+W EQG GD++ F   L     R+P T  
Sbjct: 389 RF-ESGRLKPKHP-LNIPEWDGGDLAGRRLLLWAEQGLGDELMFGALLPEALARFPGT-- 444

Query: 219 LLLVSEP-LVDLF-RQLAIANLQVATQFTFETESAYDFHLPLLSLPERLGATADVIPLAQ 276
            ++  EP LV LF R      ++  T+   +     D HL   SLP  L  TA + P   
Sbjct: 445 -IVECEPRLVPLFQRSFPGTTVRGPTRRPADA----DCHLGFGSLPRLLWPTAPLTPPPV 499

Query: 277 GYLP----RSLQSEIRLQANPRQLQVGFVWQAGE-TSDRRYQWRQASKSVPLEQFLQLRL 331
           G+L     R      RL+A    L++G  W +   T++RR  + +     PL +   L  
Sbjct: 500 GWLKPDPMRVAAWRSRLEALGPGLKIGIAWTSQRLTTERRQSYTELEDWAPLLRLPGLHA 559

Query: 332 QVNHCQFWSLQVGPARQSL-LQNWDWADCDLADRMHSFADTAAVLNQMDLLITVDTAIAH 390
                     ++    Q L +    W D    D++     TAA++  +DL++TV ++   
Sbjct: 560 VSLQYDGREAEIAAIEQRLGVCVHRWPD---LDQIADLEGTAALMANLDLVVTVASSAGE 616

Query: 391 LAGALEIPTWLLLPKFADWRWSLTGSETPWYQSMRLYRQAIAGD 434
           +A AL  P W L  +  DW   L  +  PW+ SMR   Q  AGD
Sbjct: 617 MAAALGTPVWRLGRR--DWT-QLGTAVRPWFPSMRCI-QPDAGD 656



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 34  PQILCRWGDWLAAAGQPEEAIAAYQAVLEFQPGCPQSIAAWAAVLNEQGQFAEAIALLDQ 93
           P+     G+ L A G+ EEA  AY+A L  +P   ++      VL   G+ AEA  LL  
Sbjct: 127 PEAANTLGNALNAQGKAEEAADAYRAALRARPDYAEAEGNLGTVLRSLGRSAEAEPLLRH 186

Query: 94  ASEQTADLWHQRA---VALQSLGDWPQALTSCDSALQLDPTAA 133
           A      L    A   +AL  LG   +  T+  + L   P  A
Sbjct: 187 AVAANPSLLEAHAALGLALLDLGRSEEGETALRAVLARRPDHA 229



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 21/144 (14%)

Query: 8   EQAASQQDWSTALQLIELAAWQEP-------DNPQIL---CRWGDWLAAAGQPEEAIAAY 57
           + A ++ +  T L+ +  +A  EP        NP +L      G  L   G+ EE   A 
Sbjct: 159 DYAEAEGNLGTVLRSLGRSAEAEPLLRHAVAANPSLLEAHAALGLALLDLGRSEEGETAL 218

Query: 58  QAVLEFQPGCPQSIAAWAAVLNEQGQFAEAIA------LLDQASEQTADLWHQRAVALQS 111
           +AVL  +P    +  A A  L  +G  A+A+       +L+ A    A+ W+   +ALQ 
Sbjct: 219 RAVLARRPDHAPAALALAGSLQRRG--ADALPAHRRHLMLEPAD---AEGWNAHGLALQV 273

Query: 112 LGDWPQALTSCDSALQLDPTAAES 135
                 A  +   AL+L PT AE+
Sbjct: 274 ADRIAPAGDAFTRALRLAPTMAEA 297