Pairwise Alignments

Query, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

Subject, 415 a.a., RNA methyltransferase from Sinorhizobium meliloti 1021

 Score =  219 bits (559), Expect = 9e-62
 Identities = 148/411 (36%), Positives = 205/411 (49%), Gaps = 25/411 (6%)

Query: 10  RIAAKGDGV--TADGRHFA-LVAPGDRIA-----ADGSII----AGPHHVDAPCVHFPG- 56
           R+ A+GDGV  T  G  FA    PG+ ++     A+G++I    A P  V+ PC HF   
Sbjct: 10  RLGAQGDGVARTEAGPVFAPFTLPGETVSLAVNKANGTLISLKEASPERVEPPCRHFGPD 69

Query: 57  -----CGGCELQQIDEPSLADFVSARVTGALAGQAVVPQTVLPAHVSPPRTRRRASLRAA 111
                CGGC LQ   +     F    V  AL  + + P+ V    ++ P  RRRA+  A 
Sbjct: 70  GVNGTCGGCTLQHASDALYHAFKRNLVIDALRSKGLTPE-VGALIIARPGDRRRAAFTAR 128

Query: 112 RQGKRITIGFAEQGSHVLVDLTMCEILDPRLFALIAPLRTMLLTCLPDKRAAHVRMSLTD 171
           R  K + +G+ +  SH +V +  C I  P + + +A +R +            + +  TD
Sbjct: 129 RTEKELLLGYNQMQSHHIVSIGECPITSPGIVSRLATIRKIAAAMASSAEPFRITVLETD 188

Query: 172 QGVDLLLEGVKVEGLAADEALGDFARGHALARLTIDQGDGPETRWEPEPATVSFGGVAVG 231
            G+DL  EG+K+       A+        +AR++++     E   EP    + F GV V 
Sbjct: 189 TGLDLAFEGLKLSDPQRRSAVDAVLGERGIARVSLNG----EIVVEPLKPAIDFDGVTVS 244

Query: 232 FPPYSFLQATPDGEAALVKAVQDALPATGAVADLFCGLGTFALAIGANRPVYAAEGARDL 291
            PP +F QAT   E A+ K V   +     VADLF G+GTFAL I     V+A EG    
Sbjct: 245 PPPGAFTQATRPAEDAMAKLVLAHVGKAKRVADLFAGIGTFALRIARTARVHAVEGDDRA 304

Query: 292 VLSLKLAGHRAQ--RRMVADHRDLFRRPLTPEELNRFAAVVIDPPRAGAREQAMQLAQST 349
           V +L  A    Q  + + A+ RDLFRRP+  +EL  F AVV DPPRAGA  Q  +LA+S 
Sbjct: 305 VKALDFAARNTQGLKPVTAEKRDLFRRPMMAQELKAFDAVVFDPPRAGAETQCHELARSG 364

Query: 350 VPLIAYVSCNPGSFARDAAHLVTGGYVLDSVMPVGQFRWSTHVELVGIFRR 400
           V  IA VSCNP + ARD + L   GY +  V P+ QF WS HVE V    +
Sbjct: 365 VKKIAAVSCNPVTLARDLSILTAAGYRITGVTPIDQFLWSAHVETVATLEK 415