Pairwise Alignments

Query, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  118 bits (296), Expect = 3e-31
 Identities = 105/366 (28%), Positives = 163/366 (44%), Gaps = 17/366 (4%)

Query: 51  CVHFPGCGGCELQQIDEPSLADFVSARVTGALAGQA-VVPQTVLPAHVSPP---RTRRRA 106
           C HF  CGGC +Q ++  +        +   L   A + P+ V      P    R R R 
Sbjct: 66  CPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARL 125

Query: 107 SLRAARQGKRITIGFAEQGSHVLVDLTMCEILDPRLFALIAPLRTMLLTCLPDKRAAHVR 166
           ++R   + K + +GF E+ S  + DL  C IL   +  L+ PLR + +      R   V 
Sbjct: 126 TVRMV-ESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVE 184

Query: 167 MSLTDQGVDLLLEGVKVEGLAADEALGDFARGHALARLTIDQGDGPETRWEP-EPATVSF 225
           +++ ++   ++L  ++    A ++ L  FA  H +      +G     R+ P +   +S+
Sbjct: 185 IAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHPVDGPDLSY 244

Query: 226 ----GGVAVGFPPYSFLQATPDGEAALVKAVQDAL-PATGA-VADLFCGLGTFALAIG-A 278
                G+ + F P  F Q  P     L++     L P  G  +ADLFCGLG F L I  +
Sbjct: 245 LLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGLGNFTLPIARS 304

Query: 279 NRPVYAAEGARDLVLSLK--LAGHRAQRRMVADHRDLFR-RPLTPEELNRFAAVVIDPPR 335
              V   EG ++L    +   A +     +     +LF   P +   L  F  ++IDPPR
Sbjct: 305 GARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHFDKMLIDPPR 364

Query: 336 AGAREQAMQLAQSTVPLIAYVSCNPGSFARDAAHLV-TGGYVLDSVMPVGQFRWSTHVEL 394
            GA E    L + +   I YVSCNP + ARDAA LV   GY       V  F  ++HVE 
Sbjct: 365 EGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVNMFPHTSHVES 424

Query: 395 VGIFRR 400
           + +F +
Sbjct: 425 IALFEK 430