Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 615 a.a., ATP-dependent metalloprotease FtsH from Pseudomonas stutzeri RCH2

 Score =  210 bits (535), Expect = 2e-58
 Identities = 127/287 (44%), Positives = 172/287 (59%), Gaps = 15/287 (5%)

Query: 477 IGWADIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAR 536
           + +AD+ G+D+A+  LKE +E  L+DP  + RLG R  KG LL GPPGTGKTLLA+AVA 
Sbjct: 154 VSFADVAGVDEAKDELKEIIEF-LRDPQTYGRLGGRMPKGVLLVGPPGTGKTLLARAVAG 212

Query: 537 EAQANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGG--LG 594
           EA+  F +   S+ +  + G    ++  LF +AR  AP +IFIDELD+L  ARG G   G
Sbjct: 213 EAKVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAIIFIDELDALGRARGAGPLSG 272

Query: 595 EPAVTERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAG 654
                E+ +N +L EMDG +    +V++ ATNRP ++DPALLR GRFD  + V  PD+ G
Sbjct: 273 GHDEKEQTLNQLLVEMDGFDTSSGLVLLAATNRPEILDPALLRAGRFDRQVLVDRPDKVG 332

Query: 655 RKRILAIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAH 714
           R +IL +H KK  L +DVD   +AA T  FTGADL +L   A L+A R++   EAV M  
Sbjct: 333 RVQILNVHLKKSRLGTDVDPQAIAALTPGFTGADLANLVNEATLLATRRN--AEAVAMED 390

Query: 715 FEAALE------ETRASVTPEMERE----YEQIQATLKQSAMQVDPI 751
           F AA+E      E R  +    ERE    +E   A +  +   VDP+
Sbjct: 391 FTAAIERIIAGLEKRNRLLNPREREIVAYHEMGHALVAMALPGVDPV 437



 Score =  198 bits (503), Expect = 8e-55
 Identities = 118/263 (44%), Positives = 162/263 (61%), Gaps = 22/263 (8%)

Query: 204 VTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVAN 263
           V++ DV G+ E  D+L+E++E  LR P+ + RLG   PKGV+L GPPGTGKT LARAVA 
Sbjct: 154 VSFADVAGVDEAKDELKEIIEF-LRDPQTYGRLGGRMPKGVLLVGPPGTGKTLLARAVAG 212

Query: 264 ESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVT--- 320
           E++  FF I+G E +    G    ++RD+FE+A   AP+I+FIDE+D++   RG      
Sbjct: 213 EAKVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAIIFIDELDALGRARGAGPLSG 272

Query: 321 GETEK-RLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERG 379
           G  EK + + QLL  MDG +  + LV++AATNRPE +D AL R GRFDR+++V  PD+ G
Sbjct: 273 GHDEKEQTLNQLLVEMDGFDTSSGLVLLAATNRPEILDPALLRAGRFDRQVLVDRPDKVG 332

Query: 380 RREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEEGT 439
           R +IL +H +   LG  VD   +A +T GF GADLA L  EA +   RR     N E   
Sbjct: 333 RVQILNVHLKKSRLGTDVDPQAIAALTPGFTGADLANLVNEATLLATRR-----NAE--- 384

Query: 440 IPPDVLEDLSVTREDFLSAIKRV 462
                    +V  EDF +AI+R+
Sbjct: 385 ---------AVAMEDFTAAIERI 398