Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 651 a.a., ATP-dependent zinc metalloprotease FtsH from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (519), Expect = 1e-56
 Identities = 108/242 (44%), Positives = 158/242 (65%), Gaps = 4/242 (1%)

Query: 205 TYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVANE 264
           T+ DV G  E  + ++E+V+  LR P  F++LG   P GV++ GPPGTGKT LA+A+A E
Sbjct: 154 TFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAGE 212

Query: 265 SEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVTG--- 321
           ++  FF I+G + +    G    ++RD+FE+A KA+P I+FIDEID++  +RG   G   
Sbjct: 213 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGH 272

Query: 322 ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGRR 381
           +  ++ + Q+L  MDG E    ++VIAATNRP+ +D AL RPGRFDR++VVG+PD RGR 
Sbjct: 273 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 332

Query: 382 EILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEEGTIP 441
           +IL +H R +PL + V+ + +AR T GF GADLA L  EAA+   R     +++ E  + 
Sbjct: 333 QILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALFAARGNKRNVSMVEFELA 392

Query: 442 PD 443
            D
Sbjct: 393 KD 394



 Score =  196 bits (499), Expect = 2e-54
 Identities = 114/284 (40%), Positives = 173/284 (60%), Gaps = 14/284 (4%)

Query: 479 WADIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREA 538
           ++D+ G D+A+  +KE V+  L+DP  F++LG +   G L+ GPPGTGKTLLAKA+A EA
Sbjct: 155 FSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAGEA 213

Query: 539 QANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA- 597
           +  F     SD +  + G    ++  +F +A++ +P +IFIDE+D++   RG G+G    
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHD 273

Query: 598 VTERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKR 657
             E+ +N +L EMDG E  + ++VI ATNRP ++DPALLRPGRFD  + V +PD  GR++
Sbjct: 274 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 333

Query: 658 ILAIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEA 717
           IL +H +K+PLA+DV+   +A  T  F+GADL +L   A L A R + +   V+M  FE 
Sbjct: 334 ILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALFAARGNKR--NVSMVEFEL 391

Query: 718 ALE------ETRASVTPEMERE----YEQIQATLKQSAMQVDPI 751
           A +      E R+ V  E  +E    +E   A + +   + DP+
Sbjct: 392 AKDKIMMGAERRSMVMSEEIKESTAYHEAGHAVVGRLVPEHDPV 435