Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 630 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  207 bits (528), Expect = 1e-57
 Identities = 113/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 201 RADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARA 260
           +  V +DDV G+ E  ++L+E+V   L+  E F  +G   PKGV+L GPPGTGKT LA+A
Sbjct: 168 KTGVLFDDVAGIEEAKEELQEVVTF-LKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKA 226

Query: 261 VANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVT 320
           +A E+   FF I+G E +    G    ++RD+F++A + AP I+FIDEID++  +RG   
Sbjct: 227 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGI 286

Query: 321 G---ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDE 377
           G   +  ++ + QLLT MDG E  T +++IAATNRP+ +D AL RPGRFDR+I+V  PD 
Sbjct: 287 GGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAALTRPGRFDRQIIVDAPDI 346

Query: 378 RGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEE 437
           +GR EIL +H R   L + V L  +AR T GF GADLA L  EAAI T RR    + L E
Sbjct: 347 KGRLEILKVHARNKKLAEDVSLDVIARRTPGFAGADLANLLNEAAILTARRRKDAITLTE 406



 Score =  186 bits (473), Expect = 2e-51
 Identities = 104/262 (39%), Positives = 158/262 (60%), Gaps = 6/262 (2%)

Query: 481 DIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQA 540
           D+ G+++A+  L+E V   LK+ + F  +G R  KG LL GPPGTGKTLLAKA+A EA  
Sbjct: 175 DVAGIEEAKEELQEVVTF-LKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV 233

Query: 541 NFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA-VT 599
            F +   S+ +  + G    ++  LF +A++ AP ++FIDE+D++   RG G+G      
Sbjct: 234 PFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGGNDER 293

Query: 600 ERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRIL 659
           E+ +N +L EMDG E    +++I ATNRP ++D AL RPGRFD  I V  PD  GR  IL
Sbjct: 294 EQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAALTRPGRFDRQIIVDAPDIKGRLEIL 353

Query: 660 AIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAAL 719
            +H +   LA DV LD +A RT  F GADL +L   A ++  R+  + +A+T+   + A+
Sbjct: 354 KVHARNKKLAEDVSLDVIARRTPGFAGADLANLLNEAAILTARR--RKDAITLTEIDDAV 411

Query: 720 EETRASV--TPEMEREYEQIQA 739
           +   A +  TP ++ + +++ A
Sbjct: 412 DRVVAGMEGTPLVDGKSKRLIA 433