Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 650 a.a., vesicle-fusing ATPase (RefSeq) from Shewanella amazonensis SB2B

 Score =  204 bits (519), Expect = 1e-56
 Identities = 108/236 (45%), Positives = 157/236 (66%), Gaps = 4/236 (1%)

Query: 205 TYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVANE 264
           T+ DV G  E  ++++EMV+  LR P  F++LG   P GV++ GPPGTGKT LA+A+A E
Sbjct: 155 TFADVAGCDEAKEEVKEMVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 213

Query: 265 SEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVTG--- 321
           ++  FF I+G + +    G    ++RD+F++A K+AP I+FIDEID++  +RG   G   
Sbjct: 214 AKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 273

Query: 322 ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGRR 381
           +  ++ + Q+L  MDG E    ++VIAATNRP+ +D AL RPGRFDR++VVG+PD RGR 
Sbjct: 274 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGRE 333

Query: 382 EILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEE 437
           +IL +H R +PL + V  + +AR T GF GADLA L  EAA+   R     +++EE
Sbjct: 334 QILKVHMRKVPLAEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVSMEE 389



 Score =  201 bits (512), Expect = 8e-56
 Identities = 115/262 (43%), Positives = 163/262 (62%), Gaps = 10/262 (3%)

Query: 479 WADIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREA 538
           +AD+ G D+A+  +KE V+  L+DP  F++LG R   G L+ GPPGTGKTLLAKA+A EA
Sbjct: 156 FADVAGCDEAKEEVKEMVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGEA 214

Query: 539 QANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA- 597
           +  F     SD +  + G    ++  +F +A++ AP +IFIDE+D++   RG GLG    
Sbjct: 215 KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHD 274

Query: 598 VTERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKR 657
             E+ +N +L EMDG E  + ++VI ATNRP ++D ALLRPGRFD  + V +PD  GR++
Sbjct: 275 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGREQ 334

Query: 658 ILAIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEA 717
           IL +H +K+PLA DV    +A  T  F+GADL +L   A L A R + +V  V+M  FE 
Sbjct: 335 ILKVHMRKVPLAEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRV--VSMEEFER 392

Query: 718 ALE------ETRASVTPEMERE 733
           A +      E R+ V  E E+E
Sbjct: 393 AKDKIMMGAERRSMVMSEAEKE 414