Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 637 a.a., ATP-dependent zinc metalloprotease FtsH from Phaeobacter inhibens DSM 17395

 Score =  213 bits (543), Expect = 2e-59
 Identities = 133/307 (43%), Positives = 173/307 (56%), Gaps = 32/307 (10%)

Query: 204 VTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVAN 263
           VT+DDV G+ E  ++L E+VE  LR P+ F RLG   PKG +L GPPGTGKT LARA+A 
Sbjct: 151 VTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAG 209

Query: 264 ESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVTG-- 321
           E+   FF I+G + +    G    ++RD+FE+A K AP I+FIDEID++   RG   G  
Sbjct: 210 EAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGG 269

Query: 322 -ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGR 380
            +  ++ + QLL  MDG E    ++++AATNR + +D AL RPGRFDR + VG PD +GR
Sbjct: 270 NDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGR 329

Query: 381 REILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEEGTI 440
            +ILG+H R  PLG  VDL  +AR T GF GADLA L  EAA+   R             
Sbjct: 330 EKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAAR------------- 376

Query: 441 PPDVLEDLSVTREDFLSAIKRVQPSAMREVMV----QAPNIGWADIGGLDDAQMRLKEGV 496
               +    VT EDF SA  +V   A R  MV    Q     + + G           G+
Sbjct: 377 ----VGRRFVTMEDFESAKDKVMMGAERRSMVLTQDQKEKTAYHESG-------HAVVGM 425

Query: 497 ELPLKDP 503
            LPL DP
Sbjct: 426 ALPLCDP 432



 Score =  194 bits (492), Expect = 2e-53
 Identities = 115/282 (40%), Positives = 167/282 (59%), Gaps = 14/282 (4%)

Query: 481 DIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQA 540
           D+ G+D+A+  L+E VE  L++P  F RLG +  KG LL GPPGTGKTLLA+A+A EA  
Sbjct: 155 DVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEAGV 213

Query: 541 NFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA-VT 599
            F     SD +  + G    ++  +F +A++ AP ++FIDE+D++   RG G G      
Sbjct: 214 PFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDER 273

Query: 600 ERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRIL 659
           E+ +N +L EMDG E  + V+++ ATNR  ++DPALLRPGRFD  + V  PD  GR++IL
Sbjct: 274 EQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKIL 333

Query: 660 AIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAAL 719
            +H +K PL  DVDL  +A  T  F+GADL +L   A L+A R   +   VTM  FE+A 
Sbjct: 334 GVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRF--VTMEDFESAK 391

Query: 720 E------ETRASVTPEMERE----YEQIQATLKQSAMQVDPI 751
           +      E R+ V  + ++E    +E   A +  +    DP+
Sbjct: 392 DKVMMGAERRSMVLTQDQKEKTAYHESGHAVVGMALPLCDPV 433