Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  650 bits (1677), Expect = 0.0
 Identities = 351/791 (44%), Positives = 492/791 (62%), Gaps = 80/791 (10%)

Query: 13  IQVANARPEDAGRGLARLPLTVMAELQLAEGDVVEIVGKRSTPARVVRPYKEDEGLDVLR 72
           + VA A   D G+G+ R+    M +L L  GD +EI GK  T A V R Y ED+G  ++R
Sbjct: 4   LMVAEAYQGDVGKGIVRIDPLTMEKLSLKAGDAIEIAGKEKTYATVWRGYLEDQGKGIIR 63

Query: 73  LDGLQRANAGVGSGDFVQLRKIDPRPAQRVVFAPAQNNLRLQGNPDALKRVFFQRPLVAG 132
           +DG+ R N   G GD V++  ++ + A+++  AP Q      G    +     ++ +  G
Sbjct: 64  MDGILRQNTKAGIGDKVKITVVEVKEAKKITLAPMQAVRFSTGFESYVGSRLVEQVVDKG 123

Query: 133 DVVATAGQQQVPPGDMPPHLRQMLAAPAYALQEIRLIVVSTVPKGIVHIDAETEVELRAE 192
             V         P                       IV  T PKG V I+  T++EL+ E
Sbjct: 124 SKVVIGVLGTAFP----------------------FIVTGTTPKGPVKINEYTQIELKTE 161

Query: 193 -YEEPRESRRADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPG 251
              E +E++  +VTY+D+GG+ E + ++REMVELP+RYPELF++LG++PPKGV+L GPPG
Sbjct: 162 PVTELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPG 221

Query: 252 TGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDS 311
           TGKT LA+AVANE+ A F+ INGPEIM    GE+E+ LR IFEEA + +PSI+FIDEID+
Sbjct: 222 TGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDA 281

Query: 312 IAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRP-------- 363
           +APKR + +GE E+R+VAQLLTLMDGLE R  LV++AATNRP++ID ALRRP        
Sbjct: 282 VAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREIT 341

Query: 364 ---------------------------------------GRFDR---EIVVGVPDERGRR 381
                                                  G +DR   E +V + ++    
Sbjct: 342 IGIPDRHGRNEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSE 401

Query: 382 EILGIHTRGMPLGDRVDLA-------ELARMTYGFVGADLAALTREAAIETVRRLMPRLN 434
           E +    +   + D+V +        ELA  T+GF GADLAAL++EAA++T+RR +P ++
Sbjct: 402 EEIEKILKDGEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDID 461

Query: 435 LEEGTIPPDVLEDLSVTREDFLSAIKRVQPSAMREVMVQAPNIGWADIGGLDDAQMRLKE 494
           LE+  IP +VL+ + VT+EDF+  +K V+PSA+REV+V+ PNI W+D+GGL+D +  LKE
Sbjct: 462 LEKEEIPREVLDKIKVTKEDFVGGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKE 521

Query: 495 GVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKSSDLLSKW 554
            VE P+K+ + F R+GIRP KG LL+GPPGTGKTLLAKAVA E++ANFI+ K  ++ SKW
Sbjct: 522 AVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKW 581

Query: 555 YGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTERVVNTILAEMDGLE 614
            GESE+ I  +F +ARQ APTVIF DE+DS+ P RG   G   VTE+VVN +L E+DGLE
Sbjct: 582 VGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLE 641

Query: 615 ELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKMPLASDVDL 674
           E + VV+I ATNRP ++D ALLRPGR D ++ VP+P++  R  I  +HTK MP+  DV+L
Sbjct: 642 EPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNL 701

Query: 675 DQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAALEETRASVTPEMEREY 734
           ++LA  T+ +TGAD+E + R A +IALR+++  E V   HF+ A +    SV  +   EY
Sbjct: 702 EKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDGAFKRIAPSVKDDDMDEY 761

Query: 735 EQIQATLKQSA 745
           + +     Q+A
Sbjct: 762 KDLAKEYGQNA 772