Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 489 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

 Score =  276 bits (707), Expect = 9e-79
 Identities = 184/503 (36%), Positives = 272/503 (54%), Gaps = 37/503 (7%)

Query: 13  QSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLE-QGAADDGGREGSGVDR----- 66
           Q L MTPQLQQAI+LL LS L+++  +   LE NP+LE Q   DD        D      
Sbjct: 3   QQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNTDPLADNVEQKT 62

Query: 67  --EVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSGSLDM 124
             E+  PT   ET  + D +  G      P ++           P D         S   
Sbjct: 63  NTEIPEPTYQ-ETAPTVDNLEDGEWNERIPNEL-----------PVDTAWEDVYQTSASS 110

Query: 125 LGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQLIGQISEAGYLEAN 183
           L   S   +  DF +  +A  SLQ HL+ Q   + +S  D LIA  LI  I+  GYL+  
Sbjct: 111 LP--SSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDET 168

Query: 184 LLQTAHG----LGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCI--- 236
           L +        L + L  +EAVL  I  F+P G+GAR+L ECL LQ ++ +   P +   
Sbjct: 169 LEEILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWLAEA 228

Query: 237 QRLLAN-LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTPDL 295
           +RL+ + +DLL      QL R   + E++L  +I  ++  +P+PG +  S     V PD+
Sbjct: 229 KRLVTDYIDLLGGRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEPEYVVPDV 288

Query: 296 FVSRTREGWGIEVNSATLPRVLVNRTY--YVELAGGPQDKASKAWLADCLASANWLVKAL 353
            V +  + W +E+N  ++P++ VN  Y  +V+ A      A   ++ + L  A W +K+L
Sbjct: 289 IVRKHNDRWLVELNQESVPKLRVNAQYAGFVKRA---DTSADNTFMRNQLQEARWFIKSL 345

Query: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413
             R +T++KVA++IV  Q  F   G   +KPL L  +A+A+ MHEST+SRVT+ K++  P
Sbjct: 346 QSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTP 405

Query: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGMD 473
           RG+YELKYFF+S V+ ++G G  S+ A+++ IK L+ AE     LSD  +  LL A+G+ 
Sbjct: 406 RGIYELKYFFSSHVSTSEG-GECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQ 464

Query: 474 IARRTVAKYRESMGIGSSVQRRR 496
           +ARRTVAKYRES+GI  S +R+R
Sbjct: 465 VARRTVAKYRESLGIAPSSERKR 487