Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  289 bits (740), Expect = 1e-82
 Identities = 188/508 (37%), Positives = 279/508 (54%), Gaps = 26/508 (5%)

Query: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGV 64
           P L ++  Q L MTPQLQQAI+LL LS L+++  +   L+ NP+LE+   ++ G +    
Sbjct: 3   PSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLER---EEDGDDFDSS 59

Query: 65  DREVEAPTLAAETG-----ASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGS 119
           D   EA     +TG     + +    +     +S  D D G E    + P D        
Sbjct: 60  DPMAEAADRPGDTGTEKSSSQESTYEEPSHSGESADDGDWG-ERIPSELPVDTAWEDIYQ 118

Query: 120 GSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQLIGQISEAG 178
            S   L   S   +  DF S  +   SLQ HL+ Q   + +S  D LIAT LI  I++ G
Sbjct: 119 TSASSLP--SNDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQG 176

Query: 179 YLEANLLQTAHG----LGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDP 234
           YLE  L +        L + L  VE VL  I  F+P G+GAR L ECL LQ ++ +   P
Sbjct: 177 YLEETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLLLQLRQLSERTP 236

Query: 235 CI---QRLLAN-LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATP 290
            +   QRL+++ LD+L       L R   + E++L  +I  ++  +P+PG +  +     
Sbjct: 237 WLSEAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRPGSQIEASEPEY 296

Query: 291 VTPDLFVSRTREGWGIEVNSATLPRVLVNRTY--YVELAGGPQDKASKAWLADCLASANW 348
           V PD+ V +  + W +E+N   +PR+ VN  Y  +V+ A      A   ++ + L  A W
Sbjct: 297 VVPDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRA---DSSADNTFMRNQLQEARW 353

Query: 349 LVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNK 408
            +K+L  R +T++KVA++IV  Q  F  +G   +KPL L  +A+A+ MHEST+SRVT+ K
Sbjct: 354 FIKSLLSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQK 413

Query: 409 YLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLR 468
           Y+  PRG+YELKYFF+S V+ A+G G  S+ A+++ IK L+ AE     LSD  +  LL 
Sbjct: 414 YMHTPRGIYELKYFFSSHVSTAEG-GECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLE 472

Query: 469 AKGMDIARRTVAKYRESMGIGSSVQRRR 496
           A+G+ +ARRTVAKYRES+GI  S +R+R
Sbjct: 473 AQGIQVARRTVAKYRESLGIAPSSERKR 500