Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 511 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Pseudomonas syringae pv. syringae B728a

 Score =  286 bits (733), Expect = 9e-82
 Identities = 191/516 (37%), Positives = 282/516 (54%), Gaps = 41/516 (7%)

Query: 2   ALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLE-QGAADDGGRE 60
           A+ P L +R  Q L MTPQLQQAI+LL LS L+++  +   LE NP+LE Q   DD    
Sbjct: 14  AMKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDHS 73

Query: 61  GSGVDR-------EVEAPTLAAETGASDDLIAQGLGGADSP--LDVDHGAETFIDDGPAD 111
               D        +V+ PT   E+  + D + +G      P  L VD   E         
Sbjct: 74  DPLADNIEQKPNPDVQEPTYQ-ESAPTVDNLEEGEWNERIPNELPVDTAWEDIYQ----- 127

Query: 112 RMGAGSGSGSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQL 170
                + + SL      S   +  DF +  +   SLQ HL+ Q   + +S  D L+A  L
Sbjct: 128 -----TSASSLP-----SNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTL 177

Query: 171 IGQISEAGYLEANLLQTAHG----LGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQA 226
           I  I+  GYL+  L +        L + L  +EAVL  I  F+P G+GAR+L+ECL LQ 
Sbjct: 178 IDCINNQGYLDETLDEILESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQL 237

Query: 227 KEANRYDPCI---QRLLAN-LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLR 282
           ++     P +   QRL+++ +DLL      QL R   + E++L  +I  ++  +P+PG +
Sbjct: 238 RQLPAKTPWLTEAQRLVSDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQ 297

Query: 283 FASDSATPVTPDLFVSRTREGWGIEVNSATLPRVLVNRTY--YVELAGGPQDKASKAWLA 340
             S  A  V PD+ V +  E W +E+N  ++PR+ VN  Y  +V  A      A   ++ 
Sbjct: 298 IESTEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAGFVRRA---DTSADNTFMR 354

Query: 341 DCLASANWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHEST 400
           + L  A W +K+L  R +T++KVA++IV  Q  F   G   +KPL L  +A+A+ MHEST
Sbjct: 355 NQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHEST 414

Query: 401 VSRVTSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSD 460
           +SRVT+ K++  PRG+YELKYFF+S V+ ++G G  S+ A+++ IK L+ AE     LSD
Sbjct: 415 ISRVTTQKFMHTPRGIYELKYFFSSHVSTSEG-GECSSTAIRAIIKKLVAAENQKKPLSD 473

Query: 461 DTLVDLLRAKGMDIARRTVAKYRESMGIGSSVQRRR 496
             +  LL A+G+ +ARRTVAKYRES+GI  S +R+R
Sbjct: 474 SKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKR 509