Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  432 bits (1111), Expect = e-125
 Identities = 248/514 (48%), Positives = 328/514 (63%), Gaps = 11/514 (2%)

Query: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADD---G 57
           MAL   L +RQSQSLVMTPQL Q+I+LL +++LE+  F+A E+EKNPLLE   AD+    
Sbjct: 1   MALSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTIS 60

Query: 58  GREGSG---VDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMG 114
            RE +G    +   E    A ++   D  +++        LD D  A  F DD    R  
Sbjct: 61  DREDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADF-ANVFPDDTAPQRAD 119

Query: 115 AGSGSGSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQARSTLSGM-DLLIATQLIGQ 173
           A    G    + G +G  E  D D F     +L+E L +Q    LS + D LIA   I Q
Sbjct: 120 APELLGQWKSMPG-AGDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYFIDQ 178

Query: 174 ISEAGYLEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYD 233
           + +AGYL A+L +TA  LG     V  VL V+  FDP GV AR+L ECLA+Q +  NR D
Sbjct: 179 LDDAGYLHADLAETAETLGAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNRLD 238

Query: 234 PCIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTP 293
           P ++ L+ANL+LLA+     L++ICGVDEEDL DM+ E+R  DPKPG  F +     + P
Sbjct: 239 PAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFEAIIP 298

Query: 294 DLFVSRTREG-WGIEVNSATLPRVLVNRTYYVELA-GGPQDKASKAWLADCLASANWLVK 351
           D+ V    +G W +E+N   LPRVLVN  Y+ E++    ++   +A+L +CL +ANWL +
Sbjct: 299 DVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNANWLTR 358

Query: 352 ALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLS 411
           +LDQR +TI+KVASEIVRQQ+ F  +GV +L+PL LR VADAI+MHESTVSRVTSNKY+ 
Sbjct: 359 SLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSNKYML 418

Query: 412 CPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKG 471
            PRGL+ELKYFFT  + +A+   A SAE+V+  I+ +I  E A A+LSDD +VD+L+  G
Sbjct: 419 TPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVLKQAG 478

Query: 472 MDIARRTVAKYRESMGIGSSVQRRRQKALKGKAA 505
           +DIARRTVAKYRE+M I SSVQRRR+K    KAA
Sbjct: 479 VDIARRTVAKYREAMSIPSSVQRRREKRALAKAA 512