Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 500 a.a., Sigma-54 (RpoN) (NCBI) from Rhodospirillum rubrum S1H

 Score =  428 bits (1100), Expect = e-124
 Identities = 249/506 (49%), Positives = 328/506 (64%), Gaps = 17/506 (3%)

Query: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGRE 60
           M + PRLD+RQ+QSLVMTPQLQQAIKLL LSN+E+  +V  ELE+NPLLE+   DD    
Sbjct: 1   MVMSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLER---DDSADV 57

Query: 61  GSGVDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSG 120
               DR  E    +AET   D  +  G    D+PLD D    T  ++G      A +G G
Sbjct: 58  SPEPDRREERAD-SAETQVLD--VVPG-NTTDAPLDQDFN--TAAEEGTPSDSWAEAGGG 111

Query: 121 SLDMLGGGSGSGEAVD-----FDSFANAAPSLQEHLMDQARSTL-SGMDLLIATQLIGQI 174
                  GSG+  + D      +       SL++HL DQ    L +  D LIA  L+G +
Sbjct: 112 FDAGTPWGSGTSGSFDDSDGGLEQMVAGPRSLRDHLSDQITLDLKTSADRLIAHHLMGML 171

Query: 175 SEAGYLEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDP 234
            +AGYL   L + A  LG  L  VE VL  + + DP G+ ARSL ECLA+Q  + NR DP
Sbjct: 172 DDAGYLIGALDEVADSLGCSLAEVERVLGRLQAMDPPGLFARSLKECLAIQLADLNRLDP 231

Query: 235 CIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTPD 294
            +Q LL +L++L +  +  L +ICGVD ED+  MI E+R  DPKP LRF +    PV PD
Sbjct: 232 AMQALLDHLEMLGRRDIAGLLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQPVIPD 291

Query: 295 LFVSRTREG-WGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKAL 353
           + +     G W +E+NS TLPRVL+N  Y+  L+    DK ++ +L++ LA+ANWLVK+L
Sbjct: 292 VLMRPDPAGGWLVELNSETLPRVLINNRYHARLSRSG-DKETRTFLSENLATANWLVKSL 350

Query: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413
           DQR  TI+KVA+E+VRQQ+ FF +GV +L+PL LR +A+AIEMHESTVSRVTSNKY++ P
Sbjct: 351 DQRANTILKVATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSRVTSNKYIASP 410

Query: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGMD 473
           RG++ELKYFFT  + AADG  + SAEAV+  I++LI AE    +LSDD LVD+LR  G+D
Sbjct: 411 RGIFELKYFFTQAIGAADGGESHSAEAVRDRIRSLIEAESPDQVLSDDKLVDILRTDGID 470

Query: 474 IARRTVAKYRESMGIGSSVQRRRQKA 499
           IARRTVAKYRE M I SSV+R+++K+
Sbjct: 471 IARRTVAKYREGMRIASSVRRKKEKS 496