Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

 Score =  271 bits (693), Expect = 4e-77
 Identities = 182/502 (36%), Positives = 269/502 (53%), Gaps = 26/502 (5%)

Query: 7   LDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDR 66
           L ++  Q L MTPQLQQAI+LL LS+LE++  +   LE NPLLE     D  +E + ++ 
Sbjct: 5   LQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEL----DEEQESASIEL 60

Query: 67  EVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAET---FIDDGPADRMGAGSGSGSLD 123
           + +  T + +    D +        DS  D + G ET      D   D +   +    + 
Sbjct: 61  QDDGVTDSFDNKYDDKI------ELDSSQD-NSGVETSDALTQDSMPDELPVDTTWDEVY 113

Query: 124 MLGGGSGSGEAVDFDS--FANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAGYL 180
                S SG   D D       +  L EHL  Q   T  S  DL IAT +I  I E GYL
Sbjct: 114 TASPNSSSGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYL 173

Query: 181 EANLLQTAHGLGVP---LFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCIQ 237
                     +G P   L  VEAVL+ +  FDP GV AR L+ECL +Q  + +   P I 
Sbjct: 174 TQTCEDILEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIA 233

Query: 238 R----LLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTP 293
                +  +LDL+A      L R   + E++L D I  ++  +P+PGL   +     V P
Sbjct: 234 NARMLIKEHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIP 293

Query: 294 DLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKAL 353
           D+ V++ +  W +E+N  ++P++ VN+ Y   +A   + +A   ++   L  A W +K+L
Sbjct: 294 DVTVTKKKGRWVVELNPDSMPKINVNQQY-AAMARSTKSQADGQFIRGHLQEAKWFLKSL 352

Query: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413
           + R +T++KV + IV  Q+ FF  G   +KP+ L  +A+A+EMHEST+SRVT+ KY+  P
Sbjct: 353 ESRNETLLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTP 412

Query: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGMD 473
           RG++ELKYFF+S V   DG G  S+ A+++ IK L+ AE     LSD  +  LL  +G+ 
Sbjct: 413 RGIFELKYFFSSHVGTDDG-GECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIK 471

Query: 474 IARRTVAKYRESMGIGSSVQRR 495
           +ARRT+AKYRE+M I  S QR+
Sbjct: 472 VARRTIAKYREAMLIPPSNQRK 493