Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 492 a.a., RNA polymerase sigma-54 factor from Dechlorosoma suillum PS

 Score =  266 bits (679), Expect = 2e-75
 Identities = 188/513 (36%), Positives = 276/513 (53%), Gaps = 47/513 (9%)

Query: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQG--------AADD 56
           P L ++ SQ L +TPQLQQ+I+LL LS LE+E  +   L +NPLLE+         +  +
Sbjct: 3   PTLQLKLSQHLALTPQLQQSIRLLQLSTLELEQELEKYLLENPLLEREDENYEPSYSGSE 62

Query: 57  GGREGSGVDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAG 116
           G   GS  +   E P    ++G S +       GADS     HG E   DD   D +G G
Sbjct: 63  GEYAGSTAEAAAEGPR-EGDSGESGE-------GADS-----HGPEEVRDDS-RDSLGEG 108

Query: 117 SGSGSLDMLGGGS------GSGEAVDFDSFANAAPSLQEHLMDQ-ARSTLSGMDLLIATQ 169
                 D    GS         E  DF     A  SL++HL  Q     LS  D  + + 
Sbjct: 109 E-----DWFAEGSYPSASRDEDEDSDFQEVQAANTSLRDHLNWQLGLMQLSERDRQLVSF 163

Query: 170 LIGQISEAGYLEANL--LQTA--HGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQ 225
           LI  + E GYL   L  LQ A    L + L  ++  L  +   DPTGVGAR+  ECLALQ
Sbjct: 164 LIEALDEDGYLTQPLEELQEALPEELEIDLDDLQIALRHLQHLDPTGVGARTPGECLALQ 223

Query: 226 --AKEANRY-DPCIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLR 282
             A  A+   D  ++ +  +L+LLA     +L+++ G D+E L  +   ++  +P+PG +
Sbjct: 224 LEALPADEVRDQALKLVRHHLELLAGRDFTKLKKLLGCDDERLRAVTNLVKSLNPRPGAQ 283

Query: 283 FASDSATPVTPDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADC 342
           +A   A  +TPD+ V + R  W   +N    PR+ +NR Y   L+     K   + L+  
Sbjct: 284 YAPLDARYITPDVVVKKVRNQWTASINPDAYPRLRINRLYAEILS-----KQRGSSLSGQ 338

Query: 343 LASANWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVS 402
           L  A WL+K + QR  TI++V+  I+ +Q  FF +G   ++PL LR +A+ + +HESTVS
Sbjct: 339 LQEARWLIKNVQQRFDTILRVSQAILDRQRQFFEHGEVAMRPLVLREIAETLGLHESTVS 398

Query: 403 RVTSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDT 462
           RVT+ KY++ PRG++ELKYFF S V A D  GA SA A+++ IK L+ AE+    LSD  
Sbjct: 399 RVTTQKYMATPRGIFELKYFFGSHV-ATDTGGACSATAIRALIKQLVAAEDPRKPLSDSQ 457

Query: 463 LVDLLRAKGMDIARRTVAKYRESMGIGSSVQRR 495
           + ++L  +G+ +ARRT+AKYRE++ I  +  R+
Sbjct: 458 ISEILGQQGIVVARRTIAKYREALNISPANLRK 490