Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 476 a.a., RNA polymerase sigma-54 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  258 bits (660), Expect = 3e-73
 Identities = 186/503 (36%), Positives = 271/503 (53%), Gaps = 38/503 (7%)

Query: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGRE 60
           MAL  R  ++ SQ LVMTPQLQQAI+LL LS LE+   V  EL +NP LE+G  D+G   
Sbjct: 1   MALELRQQLKLSQQLVMTPQLQQAIRLLQLSRLELVETVQQELLENPFLEEGM-DEG--- 56

Query: 61  GSGVDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSG 120
                    A + A+E  +  D  A      +   + D            D +G  + S 
Sbjct: 57  ---------AASSASEASSRKDESAPEAYDRELSRNADW----------EDYLGEFASSS 97

Query: 121 SLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQLIGQISEAGY 179
               +       E   F++  +A PSL+ HLM Q R S L+     I   +IG I  +GY
Sbjct: 98  RQAQVRETELPEEMTAFEARYSARPSLEGHLMWQLRLSRLTEDQKGIGETIIGNIGSSGY 157

Query: 180 LEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCIQRL 239
           L+A++   A   G     V  VL  +  FDP GV +R+  ECL +Q  E   YD    R+
Sbjct: 158 LQASVEDIAEMCGADASEVIPVLHAVQRFDPVGVASRTPQECLLIQI-EMLGYDR--DRV 214

Query: 240 LANL------DLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTP 293
           L  L      DL  +   P LR+   +D +DL + +  ++  DP PG  F       V+P
Sbjct: 215 LVELVRDHLEDLETRRYKPLLRKF-KLDMDDLKEYLDIIQSLDPMPGSSFGGSDPMFVSP 273

Query: 294 DLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKAL 353
           D+FV +  + + I +N   LP + ++  Y   LAG       K ++ + + SA+WL+K+L
Sbjct: 274 DVFVYKYDDEFVIVLNDDGLPHLQLSSLYDQSLAG--VTGKDKDFVQEKVRSASWLIKSL 331

Query: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413
            QRQ+T+ KV   I++ Q  FF +GV  L+PL L+ +AD I MHESTVSR+T+NK+++ P
Sbjct: 332 YQRQRTLYKVVESIIKYQRGFFEDGVTRLRPLILKDIADDISMHESTVSRITTNKFVATP 391

Query: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAK-GM 472
            G++ELK+FF S +   DG   V +E+VK+ IK LIG E     LSD+ + ++L+ +  +
Sbjct: 392 HGVFELKFFFNSALELDDG-SQVGSESVKALIKKLIGEENPKEPLSDERIGEILKEQLQV 450

Query: 473 DIARRTVAKYRESMGIGSSVQRR 495
           +IARRTVAKYR +M I SS +R+
Sbjct: 451 NIARRTVAKYRTAMNIPSSSKRK 473