Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 494 a.a., RNA polymerase sigma-54 (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  158 bits (399), Expect = 5e-43
 Identities = 140/518 (27%), Positives = 237/518 (45%), Gaps = 61/518 (11%)

Query: 1   MALGPRLDIRQSQSLVMT--PQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGG 58
           MA G R    Q+Q  + T  PQ    +KLL L  +E+E  +  EL +NP LE+G  D   
Sbjct: 1   MAQGSRQIQSQAQQQIQTLSPQQILVVKLLELPAVELEDRIHAELLENPALEEGKEDAAT 60

Query: 59  REGSGVDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSG 118
            E +G         ++ E G  +D             D D  ++   +D   D       
Sbjct: 61  DEYAG--------GVSPEEGMDNDAN-----------DYDSLSDYLTEDDIPD------- 94

Query: 119 SGSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQARS-TLSGMDLLIATQLIGQISEA 177
                +        E  +   F++A  S  E L +Q R   L+     +   LIG + + 
Sbjct: 95  ---YKLQENNRSRDEQAEDIPFSDAT-SFYEILKEQLRERNLTEHQCELVEYLIGSLDDD 150

Query: 178 GYLEANL------LQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQA----K 227
           G L  +L      L    G+      +E  L ++  FDP G+GAR+L ECL +Q      
Sbjct: 151 GLLRKSLESICDELAIYAGIESTEEELEEALCILQDFDPAGIGARNLQECLMIQILRKKS 210

Query: 228 EANRYDPCI---QRLLANL-DLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRF 283
           E  +  P +   +R++++  +   +    ++ +   V EE   + I E+   +P+PG   
Sbjct: 211 EEKKPSPILNLEERIISDCYEEFTRKHWEKIIKKLDVREETFNEAIAEITKLNPRPGASL 270

Query: 284 ASD---SATPVTPDLFVSRTREGW-GIEVNSATLPRVLVNRTYYVELAGGPQDKASKA-- 337
                 +   + PD  V    +G   + +N+  +P + ++R +   +    ++KA+++  
Sbjct: 271 GETIGRNLQQIVPDFLVDTYDDGTINVSLNNRNVPELRMSRDFTEMVEEHTKNKANQSKE 330

Query: 338 ------WLADCLASANWLVKALDQRQKTIIKVASEIVRQQEDFFRNG-VAYLKPLTLRAV 390
                 +L   + +A   + A+ QRQ T++     I+  Q  FF  G  + LKP+ L+ V
Sbjct: 331 SKEAMMFLKQKMDAAQGFIDAVKQRQNTLMTTMQAIIDLQRPFFLEGDESLLKPMILKDV 390

Query: 391 ADAIEMHESTVSRVTSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIG 450
           A+   +  ST+SRV+++KY+    G+Y LK+FF+ G    DG+  +S   ++  +K  I 
Sbjct: 391 AERTGLDISTISRVSNSKYVQTNFGIYPLKFFFSDGYTTEDGE-EMSVREIRKILKECID 449

Query: 451 AEEAHAILSDDTLVDLLRAKGMDIARRTVAKYRESMGI 488
            E+    L+DD L D+L+ KG  IARRTVAKYR+ + I
Sbjct: 450 GEDKKKPLTDDELADILKEKGYPIARRTVAKYRQQLNI 487