Pairwise Alignments

Query, 275 a.a., Lipopolysaccharide ABC transporter, ATP-binding protein LptB from Sphingobium sp. HT1-2

Subject, 366 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  139 bits (349), Expect = 1e-37
 Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 4/228 (1%)

Query: 39  LSVISIAKSYDKRVVLSDVSLTVGKGEVVGLLGPNGAGKTTCFYSVMGLVRPDQGRIILD 98
           L +  + K++    V+SD +L V +GE V  LGP+G GKTT    + G   P  GRI++D
Sbjct: 17  LDLKDLHKAFGAARVVSDFTLAVERGEFVSFLGPSGCGKTTVLRMIGGFETPSSGRILID 76

Query: 99  GQDITGLPMYRRAILGLGYLPQETSIFRGLTVEQNIGAVLEMAEPNKAARAEKLEQLLDE 158
           GQD+T L   RR +   G + Q  ++F  LTV +N+   L++A    +  A +++++L+ 
Sbjct: 77  GQDVTALTPARRKV---GMVFQAYALFPNLTVAENVAFGLKVAREPASQTARRVDEMLEL 133

Query: 159 FGLTRLRDSAAMALSGGERRRCEIARALAADPSIVLLDEPFAGIDPLSIADIRDLVKQLK 218
             L +L+D     LSGG+++R  +ARALA  P I+LLDEP + +D      +R+ ++ ++
Sbjct: 134 IKLPQLKDRYPYQLSGGQQQRVALARALAVRPKILLLDEPLSALDAKIRVSLREEIRAVQ 193

Query: 219 TR-GIGVLITDHNVRETLEIVDRACIIYSGQVLFAGSPTELVAHPDVR 265
              GI  +   H+  E L + DR  ++++G+    G+P E+   P  R
Sbjct: 194 RELGITTVFVTHDQEEALSMSDRVVVMHNGRADQVGAPFEIYNAPKTR 241