Pairwise Alignments

Query, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 77/312 (24%), Positives = 125/312 (40%), Gaps = 43/312 (13%)

Query: 60  QGEKDQVLLG-VTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDNAVEY 118
           QG  D+  +G + G+     +A+   A     L+  P+   A +L  E + F       +
Sbjct: 13  QGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALF 72

Query: 119 FVSYYDYYQPEAYVARSDTYIEKESSVNESIDRMRH--SATRALLERDDVIIVASVSCLY 176
                    P+      D +   +  +++ I R+    S TR        I +  VS L 
Sbjct: 73  ---------PDWETLPYDNFSPHQDIISDRISRLYQLPSLTRG-------ITIVPVSTLL 116

Query: 177 GIGSVETYSAM-TFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPS 235
              S   +    T  +K+G      ++  +L    Y+  D  F  G +  +G  L++FP 
Sbjct: 117 QRQSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPM 176

Query: 236 HYEDTAWRISFFGDEIEEIVEFDPLSGRKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRF 295
              D  +RI FF DEI+ I  FDP + R +A +D +++ P +H     PT   A+E  R 
Sbjct: 177 GSSDP-FRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLP-AHEF---PTTAAAIEEFRN 231

Query: 296 ELTERLKELEAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTL 355
              +R           EA+R  +        ++     AGIE +          E   TL
Sbjct: 232 RWRQR----------FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETL 273

Query: 356 FEYLPENAVLFV 367
           F+YLP N+ L V
Sbjct: 274 FDYLPANSQLLV 285



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 39/137 (28%)

Query: 472 VAAQGYRTLVTTLTKRMAED-------LTEFMHEAGIKVRYMHSDVETLERI-----ELI 519
           +A    R L      R +ED       L E M   G +V ++H+ VET++++     +L+
Sbjct: 781 IATPPARRLAIKTFVRQSEDSVIREAVLREIMR--GGQVYFLHNQVETIDKVAADLEKLV 838

Query: 520 RDLRLGV---------------------YDVLIGINLLREGLDIPECGLVAILDADKEGF 558
            + R+ V                     +++L+   ++  G+D+P    + +  AD  G 
Sbjct: 839 PEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGL 898

Query: 559 LRSETSLIQTIGRAARN 575
                 L Q  GR  R+
Sbjct: 899 ----AQLHQLRGRVGRS 911