Pairwise Alignments

Query, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score = 43.5 bits (101), Expect = 6e-08
 Identities = 54/216 (25%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 61  GEKDQVLLGVTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFV 120
           G  D++ L    S +    +    A Q P L++      A  L  E +  F D AV    
Sbjct: 35  GRPDELTLIAPASARLLVASAL--ARQGPLLVVTATGREADDLAAELRGVFGD-AVALLP 91

Query: 121 SYYDYYQPEAYVARSDTYIEKESSVNESIDRMRHSATRALLERDDV-------IIVASVS 173
           S+             +T   +  S        R  A R L   DD        ++V SV 
Sbjct: 92  SW-------------ETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVR 138

Query: 174 CLYGIGSVETYSAMTFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIF 233
            L    + +       ++  G       ++ +LV L Y R D    RG F V+G  L+IF
Sbjct: 139 SLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF 198

Query: 234 PSHYEDTAWRISFFGDEIEEIVEFDPLSGRKVASLD 269
               E    R+ F+GDEI E+  F     R +  +D
Sbjct: 199 APTAEHPV-RVEFWGDEITEMRMFSVADQRSIPEID 233



 Score = 26.6 bits (57), Expect = 0.008
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 23/167 (13%)

Query: 420 VSVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRT 479
           +++SATP P  +E +     E     + ++ PP E  PV   V    ++ +++AA   R 
Sbjct: 800 LTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGP--HDDKQIAAALRRE 853

Query: 480 LV-----------TTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYD 528
           L+            +     A  + E + EA + V +     + LE    ++      +D
Sbjct: 854 LLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETT--VQRFWNREHD 911

Query: 529 VLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARN 575
           +L+   ++  GLDI     + +  AD  G     + L Q  GR  R+
Sbjct: 912 ILVCTTIVETGLDISNANTLIVERADTFGL----SQLHQLRGRVGRS 954