Pairwise Alignments

Query, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella sp. ANA-3

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 32/307 (10%)

Query: 59  KQGEKDQVLLGVTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDNAVEY 118
           K G + Q L  + G G+  T+A  +   +   LI+  +   A  +  E       + ++ 
Sbjct: 13  KNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSVIKV 72

Query: 119 FVSYYDYYQPEAYVARSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSCLYGI 178
            +       P+      D++   +  +++ ++ +    T+A      V+IV   + +  +
Sbjct: 73  RLF------PDRETLPYDSFSPHQDLISQRLETLSQ-ITQA---EHSVVIVPVTTLMMRL 122

Query: 179 GSVETYSAMTFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPSHYE 238
                 S+  F +KKG      ++ ++L    Y   +  +  G F ++G  L+IFP+   
Sbjct: 123 PPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV- 181

Query: 239 DTAWRISFFGDEIEEIVEFDPLSGRKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELT 298
           +   RI  F DE+E I  FDP + R    +D V++ P        PT   A+E  R    
Sbjct: 182 NMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYR 237

Query: 299 ERLKELEAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEY 358
            R + +  E + +             ++++     AGIENY       +      TLF+Y
Sbjct: 238 RRFEVIVKEPESV------------YQLVSRNLMPAGIENYLPLFFDEV-----ATLFDY 280

Query: 359 LPENAVL 365
           LP++  L
Sbjct: 281 LPKDTQL 287



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 486 KRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPEC 545
           ++ A+D++  + EA + V +       LER+  + D     ++VL+   ++  G+D+P  
Sbjct: 833 EKCAQDISTLLPEARVVVAHGQMRERDLERV--MSDFYHQRFNVLVCTTIIETGIDVPSA 890

Query: 546 GLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMERALNETSRRREKQ 605
             + I  AD  G       L Q  GR  R+       YA  +T   +R  ++  +R E  
Sbjct: 891 NTIIIERADTFGL----AQLHQLRGRVGRS---HHQAYAYLMTPHPKRMTSDARKRLEAI 943

Query: 606 QAYND 610
            A  D
Sbjct: 944 DALED 948



 Score = 33.9 bits (76), Expect = 5e-05
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 17  DFVPHRPARPEKS-----EGGRPFTLVSDYEPSGDQPTAIAELVAAAKQG-EKDQVLLGV 70
           D    R ARP +S     E    F     +E + DQ +AI  ++A  +     D+++ G 
Sbjct: 580 DVYARRQARPGESCDINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGD 639

Query: 71  TGSGKT-FTMAKTIEALQ--RPALILAPNKILAAQLYGEFKSFFPD 113
            G GKT   M     A+   +  ++L P  +LA Q Y  FK  F D
Sbjct: 640 VGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFAD 685