Pairwise Alignments

Query, 335 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Sphingobium sp. HT1-2

Subject, 380 a.a., DNA topoisomerase I protein from Sinorhizobium meliloti 1021

 Score =  229 bits (584), Expect = 8e-65
 Identities = 129/330 (39%), Positives = 185/330 (56%), Gaps = 8/330 (2%)

Query: 6   IIHSHDGMPGISRRVLKQGWAYRAADGSRITDRDEIDRLNAIAMPPAYRDCWFCPSPHGH 65
           +++  D  PGI R+   +G+ YR  DGS +TD     R+ A+ +PPAY + W C    GH
Sbjct: 36  LVYVSDSEPGIRRQRRGKGFVYRMPDGSIVTDPSIKSRIAALGLPPAYDNVWICLEERGH 95

Query: 66  IQATGYDERGRKQYRYHPDFRAAREAEKYAGCPAFGRALPQLRARMEEDLSRRGLRKART 125
           +QATGYD RGRKQYRYH +++A R A+K+A    FG+ALP++R  +   +          
Sbjct: 96  LQATGYDARGRKQYRYHSEWQALRSADKFAQLVEFGKALPKIRRTIRRHMQGDVENMQTV 155

Query: 126 IAAVVRLLDLAKLRVGNEHYATTNKSFGATTLRRRHVDLNGRSLTLRYRAKSGKEQQLSI 185
           +AA+V LLD A LR GN+ Y   N S+GATTL +RH+ L    + L++  K GK  Q  +
Sbjct: 156 LAALVALLDEAHLRTGNQAYVQANGSYGATTLLKRHLRLGDGFIELKFIGKGGKRVQRLL 215

Query: 186 TDSRLLRFVRAVQDLPGQHLFQYLDEDGEAHPISSSDVNAYIAQAMGGDFTAKHFRTWGA 245
              +L + +  + DLPG+ LF + DE+    P+ S  +N Y++   G   +AK FRTWG 
Sbjct: 216 RRPKLQQLLEEIADLPGRQLFVWKDENDVLRPVDSGRLNRYLSDVAGTAVSAKTFRTWGG 275

Query: 246 STIAFETLAARHV------SLKEMIEPVAAALGNTPAISRKSYIHPALIDLC-KDGQDEW 298
           +  AF T A   +      ++K+M E  A+ L NTPAISR SYIHP ++ L  K      
Sbjct: 276 TLAAF-TAARTSIEQGEWPTIKQMSEAAASVLHNTPAISRSSYIHPDVLALADKSASISA 334

Query: 299 RQGLRLPRRTRYLSRHERGLIAFLDDLANA 328
           RQ     R    L   E+ L++FL   A +
Sbjct: 335 RQLQARGRLDSELRVEEQRLLSFLQRSARS 364