Pairwise Alignments

Query, 908 a.a., Ribonuclease E (EC 3.1.26.12) from Sphingobium sp. HT1-2

Subject, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

 Score =  377 bits (967), Expect = e-108
 Identities = 239/660 (36%), Positives = 357/660 (54%), Gaps = 20/660 (3%)

Query: 174 RYKIQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNA 233
           R  I+DV+   Q ++VQ+ KEERG+KGAALTT++SLAG Y VLMPN    GGISR+I   
Sbjct: 87  RPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD 146

Query: 234 ADRKRLKSIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLRAAAPE 293
            +R  LKS ++ + LP  MG IVRTAG+ ++  E++ D + L + W  I++ +    AP 
Sbjct: 147 -ERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPF 205

Query: 294 LIHNDSDLIKRAIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLF 353
           LIH +S++I RAIRD   +DI E++++    Y+ A + ++L+ P    RVK+Y   V LF
Sbjct: 206 LIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLF 265

Query: 354 QRASVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEA 413
               +E Q+ + +   V+L SGG +VI+PTEAL SIDINS R+T+   IE+TA+ TNLEA
Sbjct: 266 SHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEA 325

Query: 414 AREIARQLRLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLME 473
           A EIARQLRLRD+ GLVVIDFIDM    + R+VE  ++EA++ DRAR+Q+GRIS FGL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLE 385

Query: 474 MSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSVITLRASQE 533
           MSRQRL   + EAS   CP C+GTG++R   S  L  LR++EEEA +   S +       
Sbjct: 386 MSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVS 445

Query: 534 AAFYVLNNKRRELDEIEQRYGVRIVVLPDGEIEGARMSVEPSGPRPERVVTYAPLAEEED 593
            A Y+LN KRR ++ IE+   VRI ++P+ ++E     V       E+ V    + ++  
Sbjct: 446 IASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKK-- 503

Query: 594 DLDVIEDEEEEEEIEEEAAPERQERGERGDRGEEREG--GRRRRRRRRRRGGQRDDAPGE 651
            L+ +++ E +E ++ E  P+R E           E       + +   +       P +
Sbjct: 504 -LEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVQQPAQ 562

Query: 652 TGEDNG-----AEDGEEGEESAEIETDA--EAVAAEPAAEGEDEGGSRRRGRRGRRGGRR 704
            G  +      A       E+A++E      +   +P  E  D    RRR  R     + 
Sbjct: 563 PGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPR----DKN 618

Query: 705 RREGGEAGAEAGETAGDDSAETVIEAEAAAPVEEAPVAEAAPEEAPAEEAPKTRRRPRAR 764
           RR G E   E  E    +++ +  + +   P +E        +     E  +  R+ R  
Sbjct: 619 RRRGNE---ENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPERQDRRN 675

Query: 765 KAKDAAAEPAAVEVTEALAEVVAEAPAAEPVVEEAAEKPKPKRTRKKKADVEAEAAAAAE 824
           K  ++       +  +  AE   E  A EP  E+AA   + ++ RK    +  +   AAE
Sbjct: 676 KRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAE 735



 Score = 90.5 bits (223), Expect = 5e-22
 Identities = 42/76 (55%), Positives = 54/76 (71%)

Query: 4  RMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGG 63
          RMLI+A  +EE RVA+V G R+ + D ES  H+  K NIY  ++TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFSEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78