Pairwise Alignments

Query, 426 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Sphingobium sp. HT1-2

Subject, 463 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  136 bits (342), Expect = 2e-36
 Identities = 121/416 (29%), Positives = 192/416 (46%), Gaps = 47/416 (11%)

Query: 13  HKRRMLNIIALATTMLAATPGDAGGIAAVDVQGDRVTVR--FD-DRVEGASAFLLDGPRR 69
           +K     II L  T  A     A  + +V +     + R  FD   V   S F LDGP R
Sbjct: 4   NKHYFQGIILLLCTFFAVAAQAANQLESVRIWAAPESTRIVFDLSEVPNYSYFTLDGPNR 63

Query: 70  IALDV--AGAQAGASGYAGSNAVVSGIRQGQLSDTMA--RIVLDLTTPAT---LGDPQIA 122
           + +D+  A  +        ++ +V GIR  + S T    R+V+DL  P        P  A
Sbjct: 64  LVVDLKKASTKLNLKNVDNNSKLVKGIRVSK-SPTKGDLRLVIDLVKPLNPNLFSLPVTA 122

Query: 123 ADGKSLSFSLQNVTDGRFRTAVGQGRLRFDAPANMSARPQKRIHSITVPIPPVARGVDLP 182
             G  L   L++ +                A A +SA          V   PV + V   
Sbjct: 123 PYGNRLVVDLEDKS----------------ATAELSA----------VSSTPVKKNVT-Q 155

Query: 183 AIEGVRDGSRPLVVIDAGHGGHDPGAINKDNGKREKDVTLAIAQAIRDQLVKSGRVRVAL 242
           +++  RD    ++ IDAGHGG DPG+I   +G  EK V   I++ +  ++  +  +R  +
Sbjct: 156 SVQASRD---IVIAIDAGHGGDDPGSIGP-SGLYEKKVVFEISKRLASKINDTPGMRAVM 211

Query: 243 TRDDDRFLVLQERYGIARKLGADLFISVHADSAENADAHGATVYTLSETASDREAAR-LA 301
            R  D F+ L  R  +AR   ADL IS+HAD+  + +  GA+V+ LS   ++ E  R L 
Sbjct: 212 IRSGDYFVNLNRRSELARNSKADLLISIHADAFTSPNPRGASVWVLSMRRANSEIGRWLE 271

Query: 302 ARENKADVLNGVNLGNQSGD----VSSILIDLTQRESMNISANFARLLQREAAPYVPFRS 357
            +E  +++L G     Q+ D    ++  L+D++   SM I  + A  + ++         
Sbjct: 272 QKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILKDLGAVTELHK 331

Query: 358 AYHRCASLMVLKAPDTPSVLFETGYISNADDALFLSSHEGQQAIARGVARAIDVHF 413
           +    AS  VLK+PD PS+L ETG+ISN  +   LSS   Q++IA  + + ++ +F
Sbjct: 332 SRPESASFAVLKSPDIPSILVETGFISNPKEERLLSSSRHQESIATAIYKGVNRYF 387