Pairwise Alignments

Query, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (361), Expect = 9e-39
 Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 22/340 (6%)

Query: 82  LSLAEARDKAREIRAKVRSGVDPIEEKRVQKQAAHIGTAKSKTFKECAELCISDKSGEWK 141
           +SLAEAR+KA E R ++  G+DP   K  QK  A   T ++ TFK  AE   + K G+ K
Sbjct: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQK--AKTITEQNATFKFVAEQWKATKEGQIK 120

Query: 142 NGKHVKQWSATLETYAYPKLGKLPVSSVDRGLILDVLRPIWATKG--ETASRLRGRIETV 199
                  W   LE YA+PKLG +PVS +   + +  LRPI  ++G  ET  R    +  +
Sbjct: 121 EKTLEGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPI-ESQGLLETVKRTAQLMNEI 178

Query: 200 LNWAKVNGYRDGENPAAWKGNLEHSLSKRQKLTRGHHASLPYAELGSFMADLRKRD--GI 257
           +N+A VN      NP A        + K+ K+   H  +L   E+   +  +   +   +
Sbjct: 179 MNYA-VNSGVIHANPLAGI----RDVFKKHKVV--HMKALQPHEMHDLIRTVATANIQHV 231

Query: 258 SARALEFAILTVARSGEVRKATWAEIDLDRKMWVIPAERMKAGKEHRVPLSDAVVALLKA 317
           +   +E+ + T+ R  E   A W EID+  K+W+IP ERMK  +EH VPL+   +A+L+A
Sbjct: 232 TRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEA 291

Query: 318 LPRVAG-SDYVFPAPRGGAMSDMALTAVLKRMDRAGL----TQHGFRSTFREWAGEVTAY 372
           +  ++G  +++FP+ R   +   + TA  K + R G     T HG R+       E   +
Sbjct: 292 IKPISGHREFIFPSSRNPKVPTDSETA-NKALGRMGFKDRTTAHGLRALASTTLNE-QGF 349

Query: 373 PREVIEHALAHSLADKAEAAYQRGSLLPKRVKLMADWATY 412
             +VIE ALAH+  ++   AY R   L  R KLM+ W+ +
Sbjct: 350 EPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEH 389