Pairwise Alignments

Query, 332 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Sphingobium sp. HT1-2

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  360 bits (925), Expect = e-104
 Identities = 181/333 (54%), Positives = 234/333 (70%), Gaps = 2/333 (0%)

Query: 2   IDLTVIWACIIGFAIIAYVVMDGFDLGIGILFPFFKVGQDRDTAMNSIAPVWDGNETWLV 61
           IDL++IWA II F I+ YVVMDGFDLG+GILFPF +   DRD  MN++APVWDGNETWLV
Sbjct: 3   IDLSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFVQDSSDRDVMMNTVAPVWDGNETWLV 62

Query: 62  MGVGGLFAAFPLAYAIILPALYAPMIAMLLGLVFRGVAFEFRWRDPAHRAF-WDKAFTTG 120
           +G  GLFAAFPLAY+++L ALY P+I ML+GL+FRGVAFEFR++    R   WDKAF  G
Sbjct: 63  LGGAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRERQHVWDKAFIGG 122

Query: 121 SVVATFAQGIALGALLQGITVEGRSYAGGWWEWLSPFSLLTGVGLLVGYALLGACWLNWK 180
           S+VATF QG+ LGA + G+ VE R+YAGG  +WL+PFSL  G+ L+V YALLG  WL  +
Sbjct: 123 SLVATFFQGVVLGAFISGLPVEDRAYAGGALDWLTPFSLFCGLALIVAYALLGCTWLMMR 182

Query: 181 TEGGLRRQTVTYAGRLGIGLLIMIGVISLATLRLETQYFQRWLSFPGVVATAQVPLATLV 240
           T G L+R+       L   +L++ G++SL T        +RW S P ++    VP+  L+
Sbjct: 183 TAGDLQRRMHDIGIPLVWAVLVVTGIVSLWTPLTHPDIAERWFSMPNLLYFMPVPVLVLL 242

Query: 241 VTFLFYRSLRLKRDAQPFFWALALFGLCLVGLGVSIWPDVVPARVTIWEAAAPVRSQLFM 300
             F   RS++   +  PF   LAL  L   GLG+S+WP+++P  V+IWEAAAP +SQ F 
Sbjct: 243 CAFGLLRSIQRYANYMPFLLTLALIFLGYSGLGISLWPNIIPPSVSIWEAAAPPQSQGFT 302

Query: 301 LVGASIMVPVILAYTAWSYWVFRGKVGIE-GYH 332
           LVGA +++P+IL YTAWSY+VFRGKV  E GYH
Sbjct: 303 LVGALLILPLILMYTAWSYYVFRGKVSAEDGYH 335