Pairwise Alignments

Query, 332 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Sphingobium sp. HT1-2

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (370), Expect = 5e-40
 Identities = 106/359 (29%), Positives = 167/359 (46%), Gaps = 36/359 (10%)

Query: 4   LTVIWACIIGFAIIAYVVMDGFDLGIGILFPFF-KVGQDRDTAMNSIAPVWDGNETWLVM 62
           L +IW  +IG  ++ + + DGFD+G+G L P   K   +R   +NSIAP WDGN+ WL+ 
Sbjct: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66

Query: 63  GVGGLFAAFPLAYAIILPALYAPMIAMLLGLVFRGVAFEFRWR--DPAHRAFWDKAFTTG 120
             G LFAA+PL YA      Y  MI  L  L  R V  ++R +      R  WD A +  
Sbjct: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126

Query: 121 SVVATFAQGIALGALLQGITVE-----GRSYAGGWWEWLSPFSLLTGVGLLVGYALLGAC 175
             +     G+A G LLQG+  +       +Y G ++  L+PF+LL G+  L    L G+ 
Sbjct: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186

Query: 176 WLNWKTEGGLRRQTVTYAGRLG----------------IGLLIMIGVI--SLATLRLETQ 217
           WL  KT   + ++    A   G                I   +++G I  + A+  L  +
Sbjct: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246

Query: 218 YFQR---WL-SFPGVVATAQVPLATLVVTFLFYRSLRLKRDAQPFFWALALFGLCLVGLG 273
             +    WL +F  V      P   +++  L   + RL +    F  +       +   G
Sbjct: 247 VIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTAG 306

Query: 274 VSIWPDVVPA------RVTIWEAAAPVRSQLFMLVGASIMVPVILAYTAWSYWVFRGKV 326
            +++P V+P+       +T+W+A +   +   M V A +MVP+IL YT WSY+   G++
Sbjct: 307 FAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGRL 365