Pairwise Alignments

Query, 332 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Sphingobium sp. HT1-2

Subject, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (538), Expect = 2e-59
 Identities = 121/331 (36%), Positives = 187/331 (56%), Gaps = 21/331 (6%)

Query: 4   LTVIWACIIGFAIIAYVVMDGFDLGIGILFPFFKVGQDRDTAMNSIAPVWDGNETWLVMG 63
           L  I+  ++GF +  Y V+DG+DLG+GIL P   V Q RD  + SI P WD NETWLV+ 
Sbjct: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQ-RDRMIASIGPFWDANETWLVLA 63

Query: 64  VGGLFAAFPLAYAIILPALYAPMIAMLLGLVFRGVAFEFRWRDPA-HRAFWDKAFTTGSV 122
           VG L  AFP A+++I   LY P   ML+ L+ RGVAF+FR +  A H+  WD  F  GS+
Sbjct: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123

Query: 123 VATFAQGIALGALLQGITVEGRSYAGGWWEWLSPFSLLTGVGLLVGYALLGACWLNWKTE 182
           +A   QG  +G  + G      +YA         F++L+ + +   Y  +G  WL  KTE
Sbjct: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174

Query: 183 GGLRRQTVTYAGRLGIGLLIMIGVISLATLR--LETQYFQRWLSFPGVVATAQVPL---A 237
           G L+ +   ++ +   G L  +GV+S++ +   + +   +RW SFP V+  A VP+   A
Sbjct: 175 GELQVRAARWSRK--AGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFA 232

Query: 238 TLVVTFLFYRSLRLKRDA---QPFFWALALFGLCLVGLGVSIWPDVVPARVTIWEAAAPV 294
           T++V   + + +    DA    PFF  + +FGL  +GL  S +P++VP  +T  +AA+  
Sbjct: 233 TILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSP 292

Query: 295 RSQLFMLVGASIMVPVILAYTAWSYWVFRGK 325
            + + + +G  I++P IL YT + Y +F+GK
Sbjct: 293 ETLMVVGIGVVIVMPTILLYTFFVYRIFKGK 323