Pairwise Alignments

Query, 323 a.a., DNA polymerase III delta prime subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

Subject, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

 Score = 56.6 bits (135), Expect = 8e-13
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 35/217 (16%)

Query: 1   MTSLVGHDAQAQALLAAASSGRMHHGWILSGPRGIGKASFARAMAMRLLADAAGPKIEGE 60
           ++ +VGH    + L        M H  + SG  G+GK + A A+A  L  D         
Sbjct: 14  LSEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDLYGD--------- 63

Query: 61  GLAVPESHPIRRLIEASAHPDYAELAPLEKDGVTARNISVDQVRGLQRLIQSAPSLSSRR 120
                           +   ++ EL   ++ G+      V       + I  AP     +
Sbjct: 64  ----------------TWRENFLELNSSDERGIDVIRTKVKDF-ARTKPIGDAPF----K 102

Query: 121 IVVIDSADDLERGAANALLKTLEEPPADMIFLLVSHAPGRLLPTIRSRCRTMRFDPLSDG 180
           ++ +D +D L   A NAL +T+E+      F+L  + P +++P I+SRC   RF PL   
Sbjct: 103 VIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTE 162

Query: 181 AMATVLR----REDESLSGPELDALLRAGEGSPGRAL 213
            +   L+    +E+ +L    +DA++   EG   +A+
Sbjct: 163 DLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAI 199