Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score = 52.0 bits (123), Expect = 5e-12
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 25/167 (14%)

Query: 4   TEGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTR 63
           TEG +R  M+  L  D              L G+ RR++ G      D+ QDT + V T+
Sbjct: 3   TEGMVRQQMLHRLYSDHHGW----------LNGWLRRQL-GCSQRAADLAQDTFVRVMTK 51

Query: 64  RATYDPERAFTAWLYAVARYKMIDHFRRVGRLRPIDD-------LADSLVADEFEASSI- 115
                  R   A+L+ +A+  +I+H+RR    R I+        L   LVA   E+ ++ 
Sbjct: 52  DEDMGAIREPRAYLHTIAKGLLINHWRR----RQIEQAYLDALALQPELVAPSPESQALI 107

Query: 116 --ARLDINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVK 160
               L I+ +L QLP K  R     +L+G++ A  A+  G+ E  VK
Sbjct: 108 VETLLQIDAMLAQLPAKVRRAFLMSQLQGMTYAAIAAELGVSERMVK 154