Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 11  LMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPE 70
           L+   + GD  A  AL+R     +  F RR + G+ D+  D+ Q+T I  +     + PE
Sbjct: 8   LIQQAVRGDRQAFGALVRAHQARVFHFIRRLL-GSTDEAADLTQETFIRAYQALPRWRPE 66

Query: 71  RAFTAWLYAVARYKMIDHFRRVGR--LRPIDDLADSLVADEFEASSIARLD-------IN 121
                WL  +AR   +D  R+  R  +   D+ A+ +   +   S + RL        + 
Sbjct: 67  ARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPI---DPAPSPLRRLQSARDLEMLE 123

Query: 122 DLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALM 171
            LL +LP +Q  ++    +EGLS  E A+   +    VK  + R  +AL+
Sbjct: 124 RLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREALL 173